Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8952_RS03355 Genome accession   NZ_AP028396
Coordinates   645282..645719 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-11505     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640282..650719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8952_RS03325 (B11505_06560) - 640771..641925 (+) 1155 WP_240693779.1 sensor histidine kinase KdpD -
  R8952_RS03330 (B11505_06570) - 641949..642137 (+) 189 WP_240693778.1 DUF4118 domain-containing protein -
  R8952_RS03335 (B11505_06580) - 642121..642594 (+) 474 WP_240693777.1 DUF4118 domain-containing protein -
  R8952_RS03340 (B11505_06590) uvrB 642696..644669 (-) 1974 WP_240693776.1 excinuclease ABC subunit UvrB -
  R8952_RS03345 (B11505_06600) - 644823..645053 (+) 231 WP_002852327.1 hypothetical protein -
  R8952_RS03350 (B11505_06610) - 645043..645285 (+) 243 WP_002854947.1 hypothetical protein -
  R8952_RS03355 (B11505_06620) Cj0683 645282..645719 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8952_RS03360 (B11505_06630) priA 645701..647554 (+) 1854 WP_317729595.1 primosomal protein N' -
  R8952_RS03365 (B11505_06640) cipA 647564..648958 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  R8952_RS03370 (B11505_06650) ispG 649104..650177 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105383 R8952_RS03355 WP_002852324.1 645282..645719(+) (Cj0683) [Campylobacter jejuni strain BCH-11505]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105383 R8952_RS03355 WP_002852324.1 645282..645719(+) (Cj0683) [Campylobacter jejuni strain BCH-11505]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment