Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABUS28_RS15895 Genome accession   NZ_CP169866
Coordinates   3297498..3299726 (+) Length   742 a.a.
NCBI ID   WP_004836223.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp779     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3292498..3304726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS15870 lnt 3292885..3294444 (+) 1560 WP_001203093.1 apolipoprotein N-acyltransferase -
  ABUS28_RS15875 - 3294446..3294784 (-) 339 WP_000434938.1 tRNA-binding protein -
  ABUS28_RS15880 - 3294928..3295272 (-) 345 WP_004836221.1 hypothetical protein -
  ABUS28_RS15885 gspG 3295539..3296120 (-) 582 WP_000865312.1 type II secretion system major pseudopilin GspG -
  ABUS28_RS15890 gspF 3296144..3297349 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  ABUS28_RS15895 priA 3297498..3299726 (+) 2229 WP_004836223.1 primosomal protein N' Machinery gene
  ABUS28_RS15900 - 3299803..3301644 (+) 1842 WP_004836225.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABUS28_RS15905 - 3301810..3302685 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  ABUS28_RS15910 - 3302823..3303434 (+) 612 WP_004836228.1 LysE family translocator -
  ABUS28_RS15915 - 3303585..3304541 (+) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83997.93 Da        Isoelectric Point: 8.5662

>NTDB_id=1053826 ABUS28_RS15895 WP_004836223.1 3297498..3299726(+) (priA) [Acinetobacter baumannii strain Rp779]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDLQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHELLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYVVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHVPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1053826 ABUS28_RS15895 WP_004836223.1 3297498..3299726(+) (priA) [Acinetobacter baumannii strain Rp779]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACTTGA
TTGGTATCATTACTGAAAAAGTTGACCTACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCAATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTGCAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTGCAATTAGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACCCAGCATGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAATTGCTAAAGCAAGGTAAGCAAGTATTAGTCTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATCGCTTTATTACATTCGGGATTAAATGACTCTA
AACGCCTACAAGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCCAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTCTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCTCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACAGTC
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGTCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGACCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTCAGTGTCGATATTCGAGCGCCAGAGCGTACAGCTCA
ATTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAAACCTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAGGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCCTTA
CTGCCGCCTTATCGCTATGTCGTACTTATACGCGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATAGCAGGTGATATTGTTGATATCTGGGGACCAATTCCAGCCCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGTGCCTAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-369)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.574

100

0.976

Multiple sequence alignment