Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS28_RS01675 Genome accession   NZ_CP169866
Coordinates   353575..354048 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain Rp779     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348575..359048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS01650 - 349038..351143 (-) 2106 WP_261480864.1 HD domain-containing protein -
  ABUS28_RS01655 - 351183..351313 (-) 131 Protein_317 hypothetical protein -
  ABUS28_RS01660 rpoZ 351352..351630 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS28_RS01665 gmk 351703..352332 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS28_RS01670 ispH 352455..353405 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS28_RS01675 fimU 353575..354048 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS28_RS01680 pilV 354042..354602 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS28_RS01685 pilW 354603..355604 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  ABUS28_RS01690 pilX 355601..356419 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=1053799 ABUS28_RS01675 WP_001214065.1 353575..354048(+) (fimU) [Acinetobacter baumannii strain Rp779]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053799 ABUS28_RS01675 WP_001214065.1 353575..354048(+) (fimU) [Acinetobacter baumannii strain Rp779]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment