Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABUS28_RS01570 Genome accession   NZ_CP169866
Coordinates   329418..329945 (+) Length   175 a.a.
NCBI ID   WP_261480865.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp779     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324418..334945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS01555 pilM 326971..328029 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABUS28_RS01560 pilN 328029..328670 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  ABUS28_RS01565 pilO 328667..329407 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS28_RS01570 pilP 329418..329945 (+) 528 WP_261480865.1 pilus assembly protein PilP Machinery gene
  ABUS28_RS01575 pilQ 330008..332173 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS28_RS01580 aroK 332185..332754 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS28_RS01585 aroB 332783..333865 (+) 1083 WP_002057695.1 3-dehydroquinate synthase -
  ABUS28_RS01590 - 333881..334756 (+) 876 WP_017725273.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19433.66 Da        Isoelectric Point: 8.9898

>NTDB_id=1053797 ABUS28_RS01570 WP_261480865.1 329418..329945(+) (pilP) [Acinetobacter baumannii strain Rp779]
MKIKQITLYVLACALLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1053797 ABUS28_RS01570 WP_261480865.1 329418..329945(+) (pilP) [Acinetobacter baumannii strain Rp779]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTTTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment