Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABUS39_RS17310 Genome accession   NZ_CP169859
Coordinates   3593515..3593841 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Rp772     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588515..3598841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS39_RS17290 - 3588623..3589252 (-) 630 WP_000219964.1 FHA domain-containing protein -
  ABUS39_RS17295 gspD 3589293..3591563 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  ABUS39_RS17300 - 3591605..3592441 (-) 837 WP_000870031.1 type II secretion system protein N -
  ABUS39_RS17305 gspN 3592441..3593184 (-) 744 WP_000730343.1 type II secretion system protein N -
  ABUS39_RS17310 hns 3593515..3593841 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABUS39_RS17315 - 3594036..3594476 (-) 441 WP_000661569.1 thioesterase family protein -
  ABUS39_RS17320 - 3594484..3595677 (-) 1194 WP_000681780.1 membrane protein -
  ABUS39_RS17325 - 3595687..3596526 (-) 840 WP_001230193.1 hypothetical protein -
  ABUS39_RS17330 - 3596535..3597302 (-) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  ABUS39_RS17335 hemC 3597307..3598224 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1053785 ABUS39_RS17310 WP_000801427.1 3593515..3593841(-) (hns) [Acinetobacter baumannii strain Rp772]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1053785 ABUS39_RS17310 WP_000801427.1 3593515..3593841(-) (hns) [Acinetobacter baumannii strain Rp772]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment