Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS39_RS01610 Genome accession   NZ_CP169859
Coordinates   341800..342618 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Rp772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336800..347618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS39_RS01575 - 337382..337512 (-) 131 Protein_301 hypothetical protein -
  ABUS39_RS01580 rpoZ 337551..337829 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS39_RS01585 gmk 337902..338531 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS39_RS01590 ispH 338654..339604 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS39_RS01595 fimU 339774..340247 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS39_RS01600 pilV 340241..340801 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS39_RS01605 pilW 340802..341803 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABUS39_RS01610 pilX 341800..342618 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS39_RS01615 pilY1 342630..346484 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS39_RS01620 pilY2 346497..346979 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABUS39_RS01625 pilE 346976..347401 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1053757 ABUS39_RS01610 WP_000149374.1 341800..342618(+) (pilX) [Acinetobacter baumannii strain Rp772]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1053757 ABUS39_RS01610 WP_000149374.1 341800..342618(+) (pilX) [Acinetobacter baumannii strain Rp772]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment