Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS41_RS10175 | Genome accession | NZ_CP169852 |
| Coordinates | 2131450..2131830 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Rp654 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2126450..2136830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS41_RS10145 | tadA | 2126568..2127071 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABUS41_RS10150 | - | 2127078..2128202 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS41_RS10155 | ung | 2128199..2128912 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS41_RS10160 | - | 2128963..2129559 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS41_RS10165 | gspK | 2129790..2130749 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS41_RS10170 | xcpW | 2130749..2131450 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS41_RS10175 | xcpV | 2131450..2131830 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS41_RS10180 | - | 2131820..2132374 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABUS41_RS10185 | - | 2132384..2132992 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS41_RS10190 | - | 2133030..2133803 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABUS41_RS10195 | - | 2133821..2134162 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS41_RS10200 | - | 2134174..2135154 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABUS41_RS10205 | kdsB | 2135166..2135927 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1053723 ABUS41_RS10175 WP_000836911.1 2131450..2131830(-) (xcpV) [Acinetobacter baumannii strain Rp654]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053723 ABUS41_RS10175 WP_000836911.1 2131450..2131830(-) (xcpV) [Acinetobacter baumannii strain Rp654]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |