Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8899_RS07610 Genome accession   NZ_AP028393
Coordinates   1495174..1496355 (-) Length   393 a.a.
NCBI ID   WP_052804181.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11457     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490174..1501355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8899_RS07580 (B11457_15010) - 1490718..1491059 (+) 342 WP_002869194.1 hypothetical protein -
  R8899_RS07585 (B11457_15020) flgM 1491122..1491319 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8899_RS07590 (B11457_15030) - 1491362..1491796 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8899_RS07595 (B11457_15040) flgK 1491806..1493632 (+) 1827 WP_002876047.1 flagellar hook-associated protein FlgK -
  R8899_RS07600 (B11457_15050) - 1493649..1494413 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8899_RS07605 (B11457_15060) - 1494417..1495181 (+) 765 WP_052804180.1 TSUP family transporter -
  R8899_RS07610 (B11457_15070) ctsF 1495174..1496355 (-) 1182 WP_052804181.1 type II secretion system F family protein Machinery gene
  R8899_RS07615 (B11457_15080) ctsE 1496352..1497911 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  R8899_RS07620 (B11457_15090) ctsX 1497901..1498488 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8899_RS07625 (B11457_15100) ctsP 1498492..1499100 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8899_RS07630 (B11457_15110) ctsD 1499093..1500505 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8899_RS07635 (B11457_15120) ctsR 1500483..1500794 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45758.39 Da        Isoelectric Point: 9.0938

>NTDB_id=105369 R8899_RS07610 WP_052804181.1 1495174..1496355(-) (ctsF) [Campylobacter jejuni strain BCH-11457]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKVLSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105369 R8899_RS07610 WP_052804181.1 1495174..1496355(-) (ctsF) [Campylobacter jejuni strain BCH-11457]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGTCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment