Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   ABUS44_RS15810 Genome accession   NZ_CP169848
Coordinates   3285300..3286100 (-) Length   266 a.a.
NCBI ID   WP_213076084.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp436     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3280300..3291100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS44_RS15790 - 3281365..3282063 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  ABUS44_RS15795 hisS 3282092..3283384 (-) 1293 WP_000095264.1 histidine--tRNA ligase -
  ABUS44_RS15800 ispG 3283381..3284496 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  ABUS44_RS15805 - 3284518..3285309 (-) 792 WP_000405164.1 RodZ domain-containing protein -
  ABUS44_RS15810 pilF 3285300..3286100 (-) 801 WP_213076084.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ABUS44_RS15815 rlmN 3286116..3287348 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABUS44_RS15820 ndk 3287471..3287902 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  ABUS44_RS15825 iscX 3288016..3288216 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  ABUS44_RS15830 - 3288316..3288630 (-) 315 Protein_3091 phosphatase PAP2 family protein -
  ABUS44_RS15835 - 3288703..3289793 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  ABUS44_RS15840 - 3289814..3290056 (-) 243 Protein_3093 phosphatidylglycerophosphatase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30193.58 Da        Isoelectric Point: 9.3926

>NTDB_id=1053684 ABUS44_RS15810 WP_213076084.1 3285300..3286100(-) (pilF) [Acinetobacter baumannii strain Rp436]
MSTPKLKIMLCMGVAVALLTRGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1053684 ABUS44_RS15810 WP_213076084.1 3285300..3286100(-) (pilF) [Acinetobacter baumannii strain Rp436]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGGGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCATCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCCTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.846

97.744

0.722

Multiple sequence alignment