Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABUS09_RS08160 Genome accession   NZ_CP169839
Coordinates   1613209..1614363 (+) Length   384 a.a.
NCBI ID   WP_000755271.1    Uniprot ID   A0A3R9DI43
Organism   Acinetobacter baumannii strain Rp426     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608209..1619363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS09_RS08135 - 1608360..1609574 (+) 1215 WP_001177953.1 oxygenase MpaB family protein -
  ABUS09_RS08140 - 1609644..1609850 (-) 207 WP_000182542.1 hypothetical protein -
  ABUS09_RS08145 - 1609904..1612018 (-) 2115 WP_001120681.1 TonB-dependent copper receptor -
  ABUS09_RS08150 - 1612091..1612519 (-) 429 WP_000231981.1 DUF2946 family protein -
  ABUS09_RS08155 def 1612556..1613086 (-) 531 WP_001196539.1 peptide deformylase -
  ABUS09_RS08160 tsaP 1613209..1614363 (+) 1155 WP_000755271.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABUS09_RS08165 dprA 1614384..1615514 (+) 1131 WP_031971973.1 DNA-processing protein DprA Machinery gene
  ABUS09_RS08170 - 1615565..1616134 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABUS09_RS08175 - 1616526..1617446 (-) 921 WP_000084546.1 DMT family transporter -
  ABUS09_RS08180 - 1617552..1618202 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42331.23 Da        Isoelectric Point: 8.2524

>NTDB_id=1053579 ABUS09_RS08160 WP_000755271.1 1613209..1614363(+) (tsaP) [Acinetobacter baumannii strain Rp426]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGHPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1053579 ABUS09_RS08160 WP_000755271.1 1613209..1614363(+) (tsaP) [Acinetobacter baumannii strain Rp426]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCATCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCAGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGATTCAATTACCAACACACCTTATATTGTTGGTACCGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAACTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACACTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGCAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACTCAGGGCATCCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACTAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9DI43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992

Multiple sequence alignment