Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABUS09_RS07710 Genome accession   NZ_CP169839
Coordinates   1521079..1521405 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Rp426     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516079..1526405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS09_RS07690 - 1516185..1516814 (-) 630 WP_024437338.1 FHA domain-containing protein -
  ABUS09_RS07695 gspD 1516855..1519125 (-) 2271 WP_024437337.1 type II secretion system secretin GspD -
  ABUS09_RS07700 - 1519167..1520003 (-) 837 WP_000870031.1 type II secretion system protein N -
  ABUS09_RS07705 gspN 1520003..1520746 (-) 744 WP_000730343.1 type II secretion system protein N -
  ABUS09_RS07710 hns 1521079..1521405 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABUS09_RS07715 - 1521600..1522040 (-) 441 WP_000661569.1 thioesterase family protein -
  ABUS09_RS07720 - 1522048..1523241 (-) 1194 WP_000681770.1 hypothetical protein -
  ABUS09_RS07725 - 1523251..1524090 (-) 840 WP_001230192.1 hypothetical protein -
  ABUS09_RS07730 - 1524099..1524866 (-) 768 WP_000897411.1 uroporphyrinogen-III synthase -
  ABUS09_RS07735 hemC 1524871..1525788 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1053574 ABUS09_RS07710 WP_000801427.1 1521079..1521405(-) (hns) [Acinetobacter baumannii strain Rp426]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1053574 ABUS09_RS07710 WP_000801427.1 1521079..1521405(-) (hns) [Acinetobacter baumannii strain Rp426]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment