Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS16_RS11395 Genome accession   NZ_CP169833
Coordinates   2368935..2369636 (+) Length   233 a.a.
NCBI ID   WP_000594579.1    Uniprot ID   A0A0D5YJA0
Organism   Acinetobacter baumannii strain Rp376     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2363935..2374636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS16_RS11360 kdsB 2364458..2365219 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS16_RS11365 - 2365231..2366211 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS16_RS11370 - 2366223..2366564 (+) 342 WP_001183027.1 PilZ domain-containing protein -
  ABUS16_RS11375 - 2366582..2367355 (+) 774 WP_000497300.1 TatD family hydrolase -
  ABUS16_RS11380 - 2367393..2368001 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS16_RS11385 - 2368011..2368565 (+) 555 WP_000841373.1 type II secretion system protein -
  ABUS16_RS11390 xcpV 2368555..2368935 (+) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS16_RS11395 xcpW 2368935..2369636 (+) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS16_RS11400 gspK 2369636..2370595 (+) 960 WP_072292244.1 type II secretion system minor pseudopilin GspK -
  ABUS16_RS11405 - 2370825..2371421 (+) 597 WP_000908449.1 6-carboxytetrahydropterin synthase -
  ABUS16_RS11410 ung 2371472..2372185 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  ABUS16_RS11415 - 2372182..2373306 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS16_RS11420 tadA 2373313..2373816 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS16_RS11425 - 2373886..2374329 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26707.66 Da        Isoelectric Point: 9.5501

>NTDB_id=1053551 ABUS16_RS11395 WP_000594579.1 2368935..2369636(+) (xcpW) [Acinetobacter baumannii strain Rp376]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053551 ABUS16_RS11395 WP_000594579.1 2368935..2369636(+) (xcpW) [Acinetobacter baumannii strain Rp376]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YJA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983

Multiple sequence alignment