Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABUS35_RS00960 Genome accession   NZ_CP169828
Coordinates   197095..198249 (-) Length   384 a.a.
NCBI ID   WP_000755268.1    Uniprot ID   A0A9P3CTL8
Organism   Acinetobacter baumannii strain Lv647     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192095..203249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS35_RS00940 - 193256..193906 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  ABUS35_RS00945 - 194012..194932 (+) 921 WP_002023238.1 DMT family transporter -
  ABUS35_RS00950 - 195324..195893 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABUS35_RS00955 dprA 195944..197074 (-) 1131 WP_002019199.1 DNA-processing protein DprA Machinery gene
  ABUS35_RS00960 tsaP 197095..198249 (-) 1155 WP_000755268.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABUS35_RS00965 def 198372..198902 (+) 531 WP_001196539.1 peptide deformylase -
  ABUS35_RS00970 - 198939..199367 (+) 429 WP_000231984.1 DUF2946 family protein -
  ABUS35_RS00975 - 199440..201554 (+) 2115 WP_001120667.1 TonB-dependent copper receptor -
  ABUS35_RS00980 - 201608..201814 (+) 207 WP_000182542.1 hypothetical protein -
  ABUS35_RS00985 - 201884..203098 (-) 1215 WP_001177962.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42364.30 Da        Isoelectric Point: 8.5816

>NTDB_id=1053418 ABUS35_RS00960 WP_000755268.1 197095..198249(-) (tsaP) [Acinetobacter baumannii strain Lv647]
MKKVFNGMVNFHALGIKKHLLALALCTGIAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1053418 ABUS35_RS00960 WP_000755268.1 197095..198249(-) (tsaP) [Acinetobacter baumannii strain Lv647]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTATCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992

Multiple sequence alignment