Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABUS42_RS11235 Genome accession   NZ_CP169819
Coordinates   2338500..2339384 (+) Length   294 a.a.
NCBI ID   WP_024437247.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2333500..2344384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS11210 - 2333898..2335145 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  ABUS42_RS11215 wrbA 2335433..2336026 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  ABUS42_RS11220 - 2336079..2336654 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  ABUS42_RS11225 - 2336727..2337440 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  ABUS42_RS11230 - 2337598..2338269 (-) 672 WP_001193959.1 hypothetical protein -
  ABUS42_RS11235 tonB2 2338500..2339384 (+) 885 WP_024437247.1 energy transducer TonB Machinery gene
  ABUS42_RS11240 ybeY 2339474..2339950 (-) 477 WP_000703570.1 rRNA maturation RNase YbeY -
  ABUS42_RS11245 - 2339960..2341048 (-) 1089 WP_000122983.1 PhoH family protein -
  ABUS42_RS11250 miaB 2341086..2342537 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33664.57 Da        Isoelectric Point: 9.0935

>NTDB_id=1053409 ABUS42_RS11235 WP_024437247.1 2338500..2339384(+) (tonB2) [Acinetobacter baumannii strain Lv419]
MLKKRSLSIEPFYYWWQDRIFIVAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1053409 ABUS42_RS11235 WP_024437247.1 2338500..2339384(+) (tonB2) [Acinetobacter baumannii strain Lv419]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAATCTTTATTGTCGCGATAATACT
CGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTCTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment