Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABUS42_RS07620 Genome accession   NZ_CP169819
Coordinates   1593545..1595113 (+) Length   522 a.a.
NCBI ID   WP_001160330.1    Uniprot ID   A0AAP1FD70
Organism   Acinetobacter baumannii strain Lv419     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588545..1600113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS07600 - 1589036..1590337 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  ABUS42_RS07605 thrC 1590393..1591532 (+) 1140 WP_000063593.1 threonine synthase -
  ABUS42_RS07610 pbpG 1591640..1592686 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABUS42_RS07615 - 1592899..1593534 (+) 636 WP_000633799.1 response regulator -
  ABUS42_RS07620 pilS 1593545..1595113 (+) 1569 WP_001160330.1 PAS domain-containing sensor histidine kinase Regulator
  ABUS42_RS07625 pilR 1595137..1596558 (+) 1422 WP_000840550.1 sigma-54 dependent transcriptional regulator Regulator
  ABUS42_RS07630 - 1596562..1597746 (-) 1185 WP_000939105.1 S41 family peptidase -
  ABUS42_RS07635 gpmI 1597762..1599309 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59197.73 Da        Isoelectric Point: 6.4995

>NTDB_id=1053386 ABUS42_RS07620 WP_001160330.1 1593545..1595113(+) (pilS) [Acinetobacter baumannii strain Lv419]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVKHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNAPDSPYITVNIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLIYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1053386 ABUS42_RS07620 WP_001160330.1 1593545..1595113(+) (pilS) [Acinetobacter baumannii strain Lv419]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTGACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGCTATTCGCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTAACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTATCAAAGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTCTTATTTTTTGTGGTTCACGGAATTGGCCAAATTGCAGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTTTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTT
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATGCCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACATCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGACTTGCTCGTA
GTGAAAGAACACATCCTATCCAGATCGATGTAAAACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGACGTTAAA
CATTCAATTCAACTTAAAATTTCTGATAGTTCTCTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCCCCGACTCACCGTACATTACGGTCAACATCCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCATCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.425

100

0.994

Multiple sequence alignment