Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABUS42_RS07465 Genome accession   NZ_CP169819
Coordinates   1562568..1562894 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Lv419     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557568..1567894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS07445 - 1557674..1558303 (-) 630 WP_024437338.1 FHA domain-containing protein -
  ABUS42_RS07450 gspD 1558344..1560614 (-) 2271 WP_024437337.1 type II secretion system secretin GspD -
  ABUS42_RS07455 - 1560656..1561492 (-) 837 WP_000870031.1 type II secretion system protein N -
  ABUS42_RS07460 gspN 1561492..1562235 (-) 744 WP_375592429.1 type II secretion system protein N -
  ABUS42_RS07465 hns 1562568..1562894 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABUS42_RS07470 - 1563089..1563529 (-) 441 WP_000661569.1 thioesterase family protein -
  ABUS42_RS07475 - 1563537..1564730 (-) 1194 WP_000681770.1 hypothetical protein -
  ABUS42_RS07480 - 1564740..1565579 (-) 840 WP_001230192.1 hypothetical protein -
  ABUS42_RS07485 - 1565588..1566355 (-) 768 WP_000897411.1 uroporphyrinogen-III synthase -
  ABUS42_RS07490 hemC 1566360..1567277 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1053384 ABUS42_RS07465 WP_000801427.1 1562568..1562894(-) (hns) [Acinetobacter baumannii strain Lv419]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1053384 ABUS42_RS07465 WP_000801427.1 1562568..1562894(-) (hns) [Acinetobacter baumannii strain Lv419]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment