Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   ABUS42_RS06310 Genome accession   NZ_CP169819
Coordinates   1311243..1312043 (-) Length   266 a.a.
NCBI ID   WP_002027454.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306243..1317043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS06290 - 1307308..1308006 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  ABUS42_RS06295 hisS 1308035..1309327 (-) 1293 WP_000095264.1 histidine--tRNA ligase -
  ABUS42_RS06300 ispG 1309324..1310439 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  ABUS42_RS06305 - 1310461..1311252 (-) 792 WP_000405163.1 RodZ domain-containing protein -
  ABUS42_RS06310 pilF 1311243..1312043 (-) 801 WP_002027454.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ABUS42_RS06315 rlmN 1312059..1313291 (-) 1233 WP_000093083.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABUS42_RS06320 ndk 1313414..1313845 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  ABUS42_RS06325 iscX 1313959..1314159 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  ABUS42_RS06330 - 1314259..1314810 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  ABUS42_RS06335 - 1314835..1316133 (-) 1299 WP_086242039.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30124.47 Da        Isoelectric Point: 9.2307

>NTDB_id=1053376 ABUS42_RS06310 WP_002027454.1 1311243..1312043(-) (pilF) [Acinetobacter baumannii strain Lv419]
MSTPKLKIMLCMGVAVALLTSGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1053376 ABUS42_RS06310 WP_002027454.1 1311243..1312043(-) (pilF) [Acinetobacter baumannii strain Lv419]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCTAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGTGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.624

100

0.996
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726

Multiple sequence alignment