Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABUS27_RS16745 Genome accession   NZ_CP169811
Coordinates   3522697..3523851 (+) Length   384 a.a.
NCBI ID   WP_000755270.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3517697..3528851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS27_RS16720 - 3517848..3519062 (+) 1215 WP_001177967.1 oxygenase MpaB family protein -
  ABUS27_RS16725 - 3519132..3519338 (-) 207 WP_000182542.1 hypothetical protein -
  ABUS27_RS16730 - 3519392..3521506 (-) 2115 WP_001120680.1 TonB-dependent copper receptor -
  ABUS27_RS16735 - 3521579..3522007 (-) 429 WP_000231981.1 DUF2946 family protein -
  ABUS27_RS16740 def 3522044..3522574 (-) 531 WP_001196539.1 peptide deformylase -
  ABUS27_RS16745 tsaP 3522697..3523851 (+) 1155 WP_000755270.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABUS27_RS16750 dprA 3523872..3525002 (+) 1131 WP_031949396.1 DNA-processing protein DprA Machinery gene
  ABUS27_RS16755 - 3525053..3525622 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABUS27_RS16760 - 3526014..3526934 (-) 921 WP_000084546.1 DMT family transporter -
  ABUS27_RS16765 - 3527040..3527690 (-) 651 WP_096877400.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42315.23 Da        Isoelectric Point: 8.2574

>NTDB_id=1053363 ABUS27_RS16745 WP_000755270.1 3522697..3523851(+) (tsaP) [Acinetobacter baumannii strain Lv371]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWHWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1053363 ABUS27_RS16745 WP_000755270.1 3522697..3523851(+) (tsaP) [Acinetobacter baumannii strain Lv371]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCATTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGGGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAAGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99

Multiple sequence alignment