Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS27_RS09660 Genome accession   NZ_CP169811
Coordinates   2039363..2040064 (-) Length   233 a.a.
NCBI ID   WP_000594585.1    Uniprot ID   A0A009Q1Y5
Organism   Acinetobacter baumannii strain Lv371     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2034363..2045064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS27_RS09630 - 2034670..2035113 (-) 444 WP_001246675.1 SRPBCC family protein -
  ABUS27_RS09635 tadA 2035183..2035686 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  ABUS27_RS09640 - 2035693..2036817 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS27_RS09645 ung 2036814..2037527 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS27_RS09650 - 2037578..2038174 (-) 597 WP_000908454.1 6-carboxytetrahydropterin synthase -
  ABUS27_RS09655 gspK 2038404..2039363 (-) 960 WP_000301468.1 type II secretion system minor pseudopilin GspK -
  ABUS27_RS09660 xcpW 2039363..2040064 (-) 702 WP_000594585.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS27_RS09665 xcpV 2040064..2040444 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS27_RS09670 - 2040434..2040988 (-) 555 WP_000841373.1 type II secretion system protein -
  ABUS27_RS09675 - 2040998..2041606 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS27_RS09680 - 2041644..2042417 (-) 774 WP_000497298.1 TatD family hydrolase -
  ABUS27_RS09685 - 2042435..2042776 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS27_RS09690 - 2042788..2043768 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS27_RS09695 kdsB 2043780..2044541 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26595.57 Da        Isoelectric Point: 9.5501

>NTDB_id=1053341 ABUS27_RS09660 WP_000594585.1 2039363..2040064(-) (xcpW) [Acinetobacter baumannii strain Lv371]
MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053341 ABUS27_RS09660 WP_000594585.1 2039363..2040064(-) (xcpW) [Acinetobacter baumannii strain Lv371]
ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009Q1Y5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment