Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABUS27_RS01570 Genome accession   NZ_CP169811
Coordinates   335889..336416 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Lv371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330889..341416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS27_RS01555 pilM 333442..334500 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABUS27_RS01560 pilN 334500..335141 (+) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  ABUS27_RS01565 pilO 335138..335878 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS27_RS01570 pilP 335889..336416 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS27_RS01575 pilQ 336479..338644 (+) 2166 WP_001017034.1 type IV pilus secretin PilQ Machinery gene
  ABUS27_RS01580 aroK 338656..339225 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS27_RS01585 aroB 339254..340336 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS27_RS01590 - 340352..341227 (+) 876 WP_000218803.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=1053324 ABUS27_RS01570 WP_000695065.1 335889..336416(+) (pilP) [Acinetobacter baumannii strain Lv371]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1053324 ABUS27_RS01570 WP_000695065.1 335889..336416(+) (pilP) [Acinetobacter baumannii strain Lv371]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment