Detailed information NTG1053306

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFCTL_RS06265
• Genome accession: NZ_OZ182546
• Coordinates: 1366813..1367838 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila isolate ZIB8567
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1361813..1372838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFCTL_RS06235	-	1362245..1362562 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
ACFCTL_RS06240	-	1362598..1362969 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
ACFCTL_RS06245	-	1363017..1364741 (-)	1725	WP_014841464.1	NAD-dependent malic enzyme	-
ACFCTL_RS06250	-	1364821..1365204 (+)	384	WP_011213593.1	hypothetical protein	-
ACFCTL_RS06255	surE	1365207..1365965 (+)	759	WP_014841465.1	5'/3'-nucleotidase SurE	-
ACFCTL_RS06260	-	1365984..1366727 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFCTL_RS06265	rpoS	1366813..1367838 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
ACFCTL_RS06270	hmgA	1367941..1369191 (-)	1251	WP_014841466.1	homogentisate 1,2-dioxygenase	-
ACFCTL_RS06275	-	1369338..1370081 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
ACFCTL_RS06280	ruvC	1370081..1370605 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
ACFCTL_RS06285	ruvA	1370602..1371201 (+)	600	WP_014841467.1	Holliday junction branch migration protein RuvA	-
ACFCTL_RS06290	-	1371251..1371571 (+)	321	WP_014841468.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=1053306 ACFCTL_RS06265 WP_011213596.1 1366813..1367838(+) (rpoS) [Legionella pneumophila isolate ZIB8567]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=1053306 ACFCTL_RS06265 WP_011213596.1 1366813..1367838(+) (rpoS) [Legionella pneumophila isolate ZIB8567]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGTTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548