Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS32_RS10400 Genome accession   NZ_CP169805
Coordinates   2148498..2149199 (-) Length   233 a.a.
NCBI ID   WP_000594588.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143498..2154199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS10370 - 2143805..2144248 (-) 444 WP_001246675.1 SRPBCC family protein -
  ABUS32_RS10375 tadA 2144318..2144821 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  ABUS32_RS10380 - 2144828..2145952 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS32_RS10385 ung 2145949..2146662 (-) 714 WP_001177527.1 uracil-DNA glycosylase -
  ABUS32_RS10390 - 2146713..2147309 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS32_RS10395 gspK 2147539..2148498 (-) 960 WP_001218621.1 type II secretion system minor pseudopilin GspK -
  ABUS32_RS10400 xcpW 2148498..2149199 (-) 702 WP_000594588.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS32_RS10405 xcpV 2149199..2149579 (-) 381 WP_000836909.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS32_RS10410 - 2149569..2150123 (-) 555 WP_000841372.1 type II secretion system protein -
  ABUS32_RS10415 - 2150133..2150741 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS32_RS10420 - 2150779..2151552 (-) 774 WP_000497301.1 TatD family hydrolase -
  ABUS32_RS10425 - 2151570..2151911 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS32_RS10430 - 2151923..2152903 (-) 981 WP_001075419.1 DNA polymerase III subunit delta' -
  ABUS32_RS10435 kdsB 2152915..2153676 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26625.55 Da        Isoelectric Point: 9.3468

>NTDB_id=1053247 ABUS32_RS10400 WP_000594588.1 2148498..2149199(-) (xcpW) [Acinetobacter baumannii strain HvAb04]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQDGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053247 ABUS32_RS10400 WP_000594588.1 2148498..2149199(-) (xcpW) [Acinetobacter baumannii strain HvAb04]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATACCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGACGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment