Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS32_RS01670 Genome accession   NZ_CP169805
Coordinates   356245..356718 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351245..361718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS01645 - 351708..353813 (-) 2106 WP_001117591.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS32_RS01650 - 353853..353983 (-) 131 Protein_316 hypothetical protein -
  ABUS32_RS01655 rpoZ 354022..354300 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS32_RS01660 gmk 354373..355002 (-) 630 WP_000015936.1 guanylate kinase -
  ABUS32_RS01665 ispH 355125..356075 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS32_RS01670 fimU 356245..356718 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS32_RS01675 pilV 356712..357272 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS32_RS01680 pilW 357273..358274 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  ABUS32_RS01685 pilX 358271..359089 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=1053232 ABUS32_RS01670 WP_001214068.1 356245..356718(+) (fimU) [Acinetobacter baumannii strain HvAb04]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053232 ABUS32_RS01670 WP_001214068.1 356245..356718(+) (fimU) [Acinetobacter baumannii strain HvAb04]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment