Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI12N_RS08715 Genome accession   NZ_OZ121084
Coordinates   1813204..1813680 (-) Length   158 a.a.
NCBI ID   WP_085668768.1    Uniprot ID   -
Organism   Escherichia coli isolate 368_BP0078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808204..1818680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI12N_RS08665 (KHEC_KMNIHL_08835) sbmC 1808594..1809067 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  ACI12N_RS08670 (KHEC_KMNIHL_08840) yeeA 1809265..1810323 (+) 1059 WP_085668766.1 FUSC family protein -
  ACI12N_RS08675 (KHEC_KMNIHL_08850) tmaR 1810495..1810824 (+) 330 WP_000450409.1 DUF496 family protein -
  ACI12N_RS08680 - 1810925..1811107 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ACI12N_RS08685 - 1811179..1811307 (+) 129 Protein_1698 transposase domain-containing protein -
  ACI12N_RS08690 - 1811596..1811688 (-) 93 Protein_1699 DUF957 domain-containing protein -
  ACI12N_RS08695 (KHEC_KMNIHL_08860) - 1811749..1811925 (-) 177 Protein_1700 DUF5983 family protein -
  ACI12N_RS08700 (KHEC_KMNIHL_08865) - 1811922..1812299 (-) 378 WP_001614648.1 TA system toxin CbtA family protein -
  ACI12N_RS08705 (KHEC_KMNIHL_08870) cbeA 1812389..1812757 (-) 369 WP_032286518.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACI12N_RS08710 (KHEC_KMNIHL_08880) yeeT 1812920..1813141 (-) 222 WP_032286237.1 DUF987 domain-containing protein -
  ACI12N_RS08715 (KHEC_KMNIHL_08885) radC 1813204..1813680 (-) 477 WP_085668768.1 RadC family protein Machinery gene
  ACI12N_RS08720 (KHEC_KMNIHL_08890) - 1813696..1814169 (-) 474 WP_001411480.1 antirestriction protein -
  ACI12N_RS08725 (KHEC_KMNIHL_08895) - 1814263..1814511 (-) 249 WP_032286278.1 hypothetical protein -
  ACI12N_RS08730 (KHEC_KMNIHL_08900) - 1814511..1815329 (-) 819 WP_032286280.1 DUF932 domain-containing protein -
  ACI12N_RS08735 (KHEC_KMNIHL_08905) - 1815447..1815642 (-) 196 Protein_1708 DUF905 family protein -
  ACI12N_RS08740 (KHEC_KMNIHL_08910) - 1815713..1818559 (-) 2847 WP_400169121.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17695.28 Da        Isoelectric Point: 7.2020

>NTDB_id=1053151 ACI12N_RS08715 WP_085668768.1 1813204..1813680(-) (radC) [Escherichia coli isolate 368_BP0078]
MQQFSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1053151 ACI12N_RS08715 WP_085668768.1 1813204..1813680(-) (radC) [Escherichia coli isolate 368_BP0078]
ATGCAACAGTTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399