Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABUS26_RS17910 Genome accession   NZ_CP169795
Coordinates   3736457..3737611 (+) Length   384 a.a.
NCBI ID   WP_000755282.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv780     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3731457..3742611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS26_RS17885 - 3731608..3732822 (+) 1215 WP_001177953.1 oxygenase MpaB family protein -
  ABUS26_RS17890 - 3732892..3733098 (-) 207 WP_000182542.1 hypothetical protein -
  ABUS26_RS17895 - 3733152..3735266 (-) 2115 WP_031959493.1 TonB-dependent copper receptor -
  ABUS26_RS17900 - 3735339..3735767 (-) 429 WP_000231981.1 DUF2946 family protein -
  ABUS26_RS17905 def 3735804..3736334 (-) 531 WP_001196539.1 peptide deformylase -
  ABUS26_RS17910 tsaP 3736457..3737611 (+) 1155 WP_000755282.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABUS26_RS17915 dprA 3737632..3738762 (+) 1131 WP_031959491.1 DNA-processing protein DprA Machinery gene
  ABUS26_RS17920 - 3738813..3739382 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABUS26_RS17925 - 3739774..3740694 (-) 921 WP_000084546.1 DMT family transporter -
  ABUS26_RS17930 - 3740800..3741453 (-) 654 WP_109067430.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42336.25 Da        Isoelectric Point: 8.5816

>NTDB_id=1053139 ABUS26_RS17910 WP_000755282.1 3736457..3737611(+) (tsaP) [Acinetobacter baumannii strain Hv780]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1053139 ABUS26_RS17910 WP_000755282.1 3736457..3737611(+) (tsaP) [Acinetobacter baumannii strain Hv780]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAATCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTTTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACAGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992

Multiple sequence alignment