Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS38_RS01575 Genome accession   NZ_CP169791
Coordinates   337086..337520 (+) Length   144 a.a.
NCBI ID   WP_375586636.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv770     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 337588..338334 337086..337520 flank 68


Gene organization within MGE regions


Location: 337086..338334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS38_RS01575 fimU 337086..337520 (+) 435 WP_375586636.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS38_RS01580 - 337588..338334 (+) 747 WP_005262957.1 IS5-like element ISAba31 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15493.85 Da        Isoelectric Point: 9.4015

>NTDB_id=1053061 ABUS38_RS01575 WP_375586636.1 337086..337520(+) (fimU) [Acinetobacter baumannii strain Hv770]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIRVC

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1053061 ABUS38_RS01575 WP_375586636.1 337086..337520(+) (fimU) [Acinetobacter baumannii strain Hv770]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTAGGGTGTGTTGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.582

97.917

0.965

Multiple sequence alignment