Detailed information NTG1053006

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI1L3_RS18050
• Genome accession: NZ_OZ121077
• Coordinates: 3670673..3671665 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 327_BP0021
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3665673..3676665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI1L3_RS18020 (KHEC_IAJHAE_18030)	ispD	3665734..3666444 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI1L3_RS18025 (KHEC_IAJHAE_18035)	ispF	3666444..3666923 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI1L3_RS18030 (KHEC_IAJHAE_18040)	truD	3666920..3667969 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACI1L3_RS18035 (KHEC_IAJHAE_18045)	surE	3667950..3668711 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI1L3_RS18040 (KHEC_IAJHAE_18050)	pcm	3668705..3669331 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI1L3_RS18045 (KHEC_IAJHAE_18055)	nlpD	3669516..3670610 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACI1L3_RS18050 (KHEC_IAJHAE_18060)	rpoS	3670673..3671665 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI1L3_RS18055 (KHEC_IAJHAE_18065)	-	3671836..3672387 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACI1L3_RS18060 (KHEC_IAJHAE_18070)	-	3672612..3673655 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACI1L3_RS18065 (KHEC_IAJHAE_18075)	ygbN	3673798..3675162 (-)	1365	WP_000104433.1	GntP family transporter	-
ACI1L3_RS18070 (KHEC_IAJHAE_18080)	ygbM	3675251..3676027 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1053006 ACI1L3_RS18050 WP_000081550.1 3670673..3671665(+) (rpoS) [Escherichia coli isolate 327_BP0021]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1053006 ACI1L3_RS18050 WP_000081550.1 3670673..3671665(+) (rpoS) [Escherichia coli isolate 327_BP0021]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715