Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABUS31_RS16260 Genome accession   NZ_CP169785
Coordinates   3404997..3405524 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Hv652     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3399997..3410524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS31_RS16240 - 3400181..3401056 (-) 876 WP_000218802.1 hypothetical protein -
  ABUS31_RS16245 aroB 3401072..3402154 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS31_RS16250 aroK 3402183..3402752 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS31_RS16255 pilQ 3402764..3404929 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS31_RS16260 pilP 3404997..3405524 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS31_RS16265 pilO 3405535..3406275 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS31_RS16270 pilN 3406272..3406913 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABUS31_RS16275 pilM 3406913..3407971 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=1053002 ABUS31_RS16260 WP_000695065.1 3404997..3405524(-) (pilP) [Acinetobacter baumannii strain Hv652]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1053002 ABUS31_RS16260 WP_000695065.1 3404997..3405524(-) (pilP) [Acinetobacter baumannii strain Hv652]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment