Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABUS03_RS17925 Genome accession   NZ_CP169782
Coordinates   3676706..3677233 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Hv640     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671706..3682233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS17905 - 3671895..3672770 (-) 876 WP_031961395.1 hypothetical protein -
  ABUS03_RS17910 aroB 3672786..3673868 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS03_RS17915 aroK 3673897..3674466 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS03_RS17920 pilQ 3674478..3676643 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS03_RS17925 pilP 3676706..3677233 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS03_RS17930 pilO 3677244..3677984 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS03_RS17935 pilN 3677981..3678622 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  ABUS03_RS17940 pilM 3678622..3679680 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=1052955 ABUS03_RS17925 WP_000695065.1 3676706..3677233(-) (pilP) [Acinetobacter baumannii strain Hv640]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1052955 ABUS03_RS17925 WP_000695065.1 3676706..3677233(-) (pilP) [Acinetobacter baumannii strain Hv640]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGCAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment