Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS03_RS17785 Genome accession   NZ_CP169782
Coordinates   3645618..3646040 (-) Length   140 a.a.
NCBI ID   WP_031961381.1    Uniprot ID   A0A836M1M3
Organism   Acinetobacter baumannii strain Hv640     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3640618..3651040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS17755 - 3641146..3642180 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  ABUS03_RS17760 - 3642295..3643236 (+) 942 WP_104131029.1 triacylglycerol lipase -
  ABUS03_RS17765 rplS 3643290..3643658 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS03_RS17770 trmD 3643866..3644606 (-) 741 WP_031961379.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS03_RS17775 rimM 3644652..3645200 (-) 549 WP_031961380.1 ribosome maturation factor RimM -
  ABUS03_RS17780 rpsP 3645220..3645471 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS03_RS17785 pilE 3645618..3646040 (-) 423 WP_031961381.1 type IV pilin protein Machinery gene
  ABUS03_RS17790 - 3646040..3646603 (-) 564 WP_031961383.1 type IV pilin protein -
  ABUS03_RS17795 - 3646613..3650683 (-) 4071 WP_031961384.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15404.52 Da        Isoelectric Point: 7.7994

>NTDB_id=1052953 ABUS03_RS17785 WP_031961381.1 3645618..3646040(-) (pilE) [Acinetobacter baumannii strain Hv640]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1052953 ABUS03_RS17785 WP_031961381.1 3645618..3646040(-) (pilE) [Acinetobacter baumannii strain Hv640]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTATTTCTACTAGCTCACA
AGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTATCTG
CTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M1M3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

64.493

98.571

0.636
  comF Acinetobacter baylyi ADP1

58.156

100

0.586
  pilA Pseudomonas aeruginosa PAK

35.374

100

0.371

Multiple sequence alignment