Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS02_RS09045 | Genome accession | NZ_CP169779 |
| Coordinates | 1858421..1858801 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Hv635 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1853421..1863801
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS02_RS09015 | kdsB | 1854324..1855085 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABUS02_RS09020 | - | 1855097..1856077 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABUS02_RS09025 | - | 1856089..1856430 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS02_RS09030 | - | 1856448..1857221 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABUS02_RS09035 | - | 1857259..1857867 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS02_RS09040 | - | 1857877..1858431 (+) | 555 | WP_000841367.1 | type II secretion system protein | - |
| ABUS02_RS09045 | xcpV | 1858421..1858801 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS02_RS09050 | xcpW | 1858801..1859502 (+) | 702 | WP_000594580.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS02_RS09055 | gspK | 1859502..1860461 (+) | 960 | WP_031960447.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS02_RS09060 | - | 1860691..1861287 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS02_RS09065 | ung | 1861338..1862051 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS02_RS09070 | - | 1862048..1863172 (+) | 1125 | WP_109067466.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS02_RS09075 | tadA | 1863179..1863682 (+) | 504 | WP_031960449.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1052901 ABUS02_RS09045 WP_000836911.1 1858421..1858801(+) (xcpV) [Acinetobacter baumannii strain Hv635]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1052901 ABUS02_RS09045 WP_000836911.1 1858421..1858801(+) (xcpV) [Acinetobacter baumannii strain Hv635]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |