Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS12_RS14935 Genome accession   NZ_CP169776
Coordinates   3102996..3103469 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain Hv455     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3097996..3108469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS12_RS14920 pilX 3100625..3101443 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS12_RS14925 pilW 3101440..3102441 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABUS12_RS14930 pilV 3102442..3103002 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS12_RS14935 fimU 3102996..3103469 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS12_RS14940 ispH 3103639..3104589 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS12_RS14945 gmk 3104712..3105341 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS12_RS14950 rpoZ 3105414..3105692 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS12_RS14955 - 3105731..3105861 (+) 131 Protein_2930 hypothetical protein -
  ABUS12_RS14960 - 3105901..3108006 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=1052858 ABUS12_RS14935 WP_001214065.1 3102996..3103469(-) (fimU) [Acinetobacter baumannii strain Hv455]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1052858 ABUS12_RS14935 WP_001214065.1 3102996..3103469(-) (fimU) [Acinetobacter baumannii strain Hv455]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment