Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS12_RS05835 | Genome accession | NZ_CP169776 |
| Coordinates | 1209670..1210050 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain Hv455 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1204670..1215050
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS12_RS05805 | kdsB | 1205573..1206334 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABUS12_RS05810 | - | 1206346..1207326 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| ABUS12_RS05815 | - | 1207338..1207679 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS12_RS05820 | - | 1207697..1208470 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABUS12_RS05825 | - | 1208508..1209116 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS12_RS05830 | - | 1209126..1209680 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| ABUS12_RS05835 | xcpV | 1209670..1210050 (+) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS12_RS05840 | xcpW | 1210050..1210751 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS12_RS05845 | gspK | 1210751..1211710 (+) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS12_RS05850 | - | 1211940..1212536 (+) | 597 | WP_000908451.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS12_RS05855 | ung | 1212587..1213300 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS12_RS05860 | - | 1213297..1214421 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS12_RS05865 | tadA | 1214428..1214931 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=1052843 ABUS12_RS05835 WP_000836910.1 1209670..1210050(+) (xcpV) [Acinetobacter baumannii strain Hv455]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1052843 ABUS12_RS05835 WP_000836910.1 1209670..1210050(+) (xcpV) [Acinetobacter baumannii strain Hv455]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |