Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABUS15_RS18855 Genome accession   NZ_CP169773
Coordinates   3930620..3930946 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Hv431     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3925620..3935946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS15_RS18835 - 3925720..3926349 (-) 630 WP_000219974.1 FHA domain-containing protein -
  ABUS15_RS18840 gspD 3926390..3928666 (-) 2277 WP_031959801.1 type II secretion system secretin GspD -
  ABUS15_RS18845 - 3928708..3929544 (-) 837 WP_000870031.1 type II secretion system protein N -
  ABUS15_RS18850 gspN 3929544..3930287 (-) 744 WP_000730343.1 type II secretion system protein N -
  ABUS15_RS18855 hns 3930620..3930946 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABUS15_RS18860 - 3931141..3931581 (-) 441 WP_000661569.1 thioesterase family protein -
  ABUS15_RS18865 - 3931589..3932782 (-) 1194 WP_000681780.1 membrane protein -
  ABUS15_RS18870 - 3932792..3933631 (-) 840 WP_001230201.1 hypothetical protein -
  ABUS15_RS18875 - 3933640..3934407 (-) 768 WP_031959800.1 uroporphyrinogen-III synthase -
  ABUS15_RS18880 hemC 3934412..3935329 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1052831 ABUS15_RS18855 WP_000801427.1 3930620..3930946(-) (hns) [Acinetobacter baumannii strain Hv431]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1052831 ABUS15_RS18855 WP_000801427.1 3930620..3930946(-) (hns) [Acinetobacter baumannii strain Hv431]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment