Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8631_RS06380 Genome accession   NZ_AP028387
Coordinates   1209438..1210391 (+) Length   317 a.a.
NCBI ID   WP_107701923.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11353     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1190835..1224784 1209438..1210391 within 0


Gene organization within MGE regions


Location: 1190835..1224784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS06285 (B11353_12700) pglI 1190835..1191764 (-) 930 WP_002882940.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  R8631_RS06290 (B11353_12710) pglH 1191757..1192836 (-) 1080 WP_079460667.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  R8631_RS06295 (B11353_12720) pglK 1192833..1194527 (-) 1695 WP_002883263.1 ABC-type lipopolysaccharide transporter PglK -
  R8631_RS06300 (B11353_12730) galE 1194521..1195507 (-) 987 WP_306197866.1 UDP-glucose 4-epimerase GalE -
  R8631_RS06305 (B11353_12740) - 1195565..1196359 (-) 795 WP_002883266.1 3'-5' exonuclease -
  R8631_RS06310 (B11353_12750) waaC 1196425..1197453 (+) 1029 WP_306179559.1 lipopolysaccharide heptosyltransferase I -
  R8631_RS06315 (B11353_12760) htrB 1197443..1198330 (+) 888 WP_070296704.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  R8631_RS06320 (B11353_12770) - 1198327..1199874 (+) 1548 WP_317647823.1 glycosyltransferase family 2 protein -
  R8631_RS06325 (B11353_12780) - 1199878..1201050 (+) 1173 WP_317647825.1 glycosyltransferase family 2 protein -
  R8631_RS06330 (B11353_12800) - 1201094..1202153 (+) 1060 Protein_1226 beta-1,4-N-acetylgalactosaminyltransferase -
  R8631_RS06335 - 1202125..1203010 (-) 886 Protein_1227 glycosyltransferase family 2 protein -
  R8631_RS06340 - 1203099..1203976 (+) 878 Protein_1228 alpha-2,3-sialyltransferase -
  R8631_RS06345 (B11353_12840) neuB 1203977..1205017 (+) 1041 WP_070284287.1 N-acetylneuraminate synthase -
  R8631_RS06350 (B11353_12850) neuC 1205014..1206138 (+) 1125 WP_317647826.1 UDP-N-acetylglucosamine 2-epimerase -
  R8631_RS06355 (B11353_12860) - 1206131..1206748 (+) 618 WP_167562429.1 glycosyltransferase -
  R8631_RS06360 (B11353_12870) - 1206745..1207077 (+) 333 WP_019260376.1 hypothetical protein -
  R8631_RS06365 (B11353_12880) - 1207074..1207739 (+) 666 WP_002869017.1 cytidylyltransferase domain-containing protein -
  R8631_RS06370 (B11353_12890) - 1207727..1208560 (+) 834 WP_002882959.1 CatB-related O-acetyltransferase -
  R8631_RS06375 (B11353_12900) - 1208552..1209379 (-) 828 WP_052785832.1 glycosyltransferase family 2 protein -
  R8631_RS06380 (B11353_12910) waaF 1209438..1210391 (+) 954 WP_107701923.1 glycosyltransferase family 9 protein Regulator
  R8631_RS06385 (B11353_12920) - 1210398..1211153 (-) 756 WP_002869013.1 glycosyltransferase family 25 protein -
  R8631_RS06390 (B11353_12930) gmhA 1211153..1211713 (-) 561 WP_107701924.1 D-sedoheptulose 7-phosphate isomerase -
  R8631_RS06395 (B11353_12940) rfaE1 1211710..1213095 (-) 1386 WP_107701925.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8631_RS06400 (B11353_12950) rfaD 1213088..1214041 (-) 954 WP_052802041.1 ADP-glyceromanno-heptose 6-epimerase -
  R8631_RS06405 (B11353_12960) gmhB 1214043..1214604 (-) 562 Protein_1241 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  R8631_RS06410 (B11353_12970) - 1214685..1214987 (+) 303 WP_052785829.1 c-type cytochrome -
  R8631_RS06415 (B11353_12980) ccoS 1215011..1215217 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  R8631_RS06420 (B11353_12990) - 1215214..1217571 (-) 2358 WP_107701927.1 heavy metal translocating P-type ATPase -
  R8631_RS06425 (B11353_13000) rho 1217680..1218978 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  R8631_RS06430 (B11353_13010) dnaX 1218982..1220517 (+) 1536 WP_002858347.1 DNA polymerase III subunit gamma/tau -
  R8631_RS06435 (B11353_13020) - 1220594..1222495 (+) 1902 WP_019260231.1 NAD(P)/FAD-dependent oxidoreductase -
  R8631_RS06440 (B11353_13030) copA 1222485..1224590 (-) 2106 WP_002894644.1 copper-translocating P-type ATPase CopA -
  R8631_RS06445 (B11353_13040) - 1224590..1224784 (-) 195 WP_002882808.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36534.16 Da        Isoelectric Point: 10.2875

>NTDB_id=105280 R8631_RS06380 WP_107701923.1 1209438..1210391(+) (waaF) [Campylobacter jejuni strain BCH-11353]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=105280 R8631_RS06380 WP_107701923.1 1209438..1210391(+) (waaF) [Campylobacter jejuni strain BCH-11353]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCCTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.675

99.054

0.918

Multiple sequence alignment