Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACB691_RS21000 Genome accession   NZ_CP169739
Coordinates   4091873..4092916 (-) Length   347 a.a.
NCBI ID   WP_001013206.1    Uniprot ID   -
Organism   Bacillus paranthracis strain mr-1B     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4086873..4097916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB691_RS20955 - 4087301..4087501 (-) 201 WP_000106079.1 YqzE family protein -
  ACB691_RS20960 aroK 4087540..4088037 (-) 498 WP_000836628.1 shikimate kinase AroK -
  ACB691_RS20965 - 4088157..4088807 (-) 651 WP_000183848.1 2OG-Fe(II) oxygenase -
  ACB691_RS20970 comGG 4088983..4089354 (-) 372 WP_000595196.1 competence type IV pilus minor pilin ComGG -
  ACB691_RS20975 comGF 4089351..4089821 (-) 471 WP_000923058.1 competence type IV pilus minor pilin ComGF -
  ACB691_RS20980 comGE 4089791..4090093 (-) 303 WP_000829518.1 competence type IV pilus minor pilin ComGE -
  ACB691_RS20985 comGD 4090086..4090541 (-) 456 WP_000810387.1 comG operon protein ComGD -
  ACB691_RS20990 comGC 4090538..4090837 (-) 300 WP_001178694.1 competence type IV pilus major pilin ComGC -
  ACB691_RS20995 comGB 4090849..4091880 (-) 1032 WP_000473554.1 competence type IV pilus assembly protein ComGB -
  ACB691_RS21000 comGA 4091873..4092916 (-) 1044 WP_001013206.1 competence protein ComGA Machinery gene
  ACB691_RS21005 - 4093122..4093817 (+) 696 WP_000434109.1 metalloregulator ArsR/SmtB family transcription factor -
  ACB691_RS21010 - 4093943..4094185 (+) 243 WP_000440714.1 DUF2626 domain-containing protein -
  ACB691_RS21015 - 4094293..4095687 (+) 1395 WP_001094339.1 L-cystine transporter -
  ACB691_RS21020 - 4095862..4096269 (-) 408 WP_000877912.1 hypothetical protein -
  ACB691_RS21025 - 4096357..4096572 (-) 216 WP_001008331.1 DUF3912 family protein -
  ACB691_RS21030 - 4096827..4097138 (+) 312 WP_001093243.1 hypothetical protein -
  ACB691_RS21035 - 4097175..4097663 (-) 489 WP_000764272.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39361.84 Da        Isoelectric Point: 9.1826

>NTDB_id=1052719 ACB691_RS21000 WP_001013206.1 4091873..4092916(-) (comGA) [Bacillus paranthracis strain mr-1B]
MNGIESFANTILKEACRVQASDLHIVPRKKDVVIQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTVCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1052719 ACB691_RS21000 WP_001013206.1 4091873..4092916(-) (comGA) [Bacillus paranthracis strain mr-1B]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGTGATTCAACTGCGCATAGGGAAAGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGATCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTGG
GTGAAATTCGTGATGAAGAAACAGCAAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGAGCAATACTTCGGTTTATGGACTTTGGCATAACAAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTTGAATTGAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTGTATGTAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCATGAGACATTAGAGTCTTCGTTGCGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.501

100

0.585
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366

Multiple sequence alignment