Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACEXHJ_RS09655 Genome accession   NZ_CP169650
Coordinates   1976279..1977961 (-) Length   560 a.a.
NCBI ID   WP_277892655.1    Uniprot ID   -
Organism   Enterococcus faecium strain F11.1G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971279..1982961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEXHJ_RS09625 (ACEXHJ_09625) ftsL 1972551..1972952 (-) 402 WP_002297992.1 cell division protein FtsL -
  ACEXHJ_RS09630 (ACEXHJ_09630) rsmH 1972957..1973916 (-) 960 WP_002291868.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  ACEXHJ_RS09635 (ACEXHJ_09635) mraZ 1973937..1974368 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  ACEXHJ_RS09640 (ACEXHJ_09640) - 1974539..1974907 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  ACEXHJ_RS09645 (ACEXHJ_09645) - 1975078..1976034 (+) 957 WP_277892654.1 magnesium transporter CorA family protein -
  ACEXHJ_RS09650 (ACEXHJ_09650) - 1976107..1976223 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  ACEXHJ_RS09655 (ACEXHJ_09655) recN 1976279..1977961 (-) 1683 WP_277892655.1 DNA repair protein RecN Machinery gene
  ACEXHJ_RS09660 (ACEXHJ_09660) - 1977979..1978428 (-) 450 WP_002291879.1 arginine repressor -
  ACEXHJ_RS09665 (ACEXHJ_09665) - 1978535..1979353 (-) 819 WP_024634769.1 TlyA family RNA methyltransferase -
  ACEXHJ_RS09670 (ACEXHJ_09670) - 1979362..1980252 (-) 891 WP_002315412.1 polyprenyl synthetase family protein -
  ACEXHJ_RS09675 (ACEXHJ_09675) - 1980254..1980478 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  ACEXHJ_RS09680 (ACEXHJ_09680) xseA 1980483..1981820 (-) 1338 WP_375319610.1 exodeoxyribonuclease VII large subunit -
  ACEXHJ_RS09685 (ACEXHJ_09685) - 1981821..1982675 (-) 855 WP_002343033.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63388.81 Da        Isoelectric Point: 4.5791

>NTDB_id=1052610 ACEXHJ_RS09655 WP_277892655.1 1976279..1977961(-) (recN) [Enterococcus faecium strain F11.1G]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IELILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=1052610 ACEXHJ_RS09655 WP_277892655.1 1976279..1977961(-) (recN) [Enterococcus faecium strain F11.1G]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTTGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGCGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.298

100

0.502

Multiple sequence alignment