Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACETMN_RS29770 Genome accession   NZ_CP169648
Coordinates   6494487..6495854 (-) Length   455 a.a.
NCBI ID   WP_036671578.1    Uniprot ID   A0AAN4L8U6
Organism   Paenibacillus sp. M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6489487..6500854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETMN_RS29740 (ACETMN_29740) ispF 6489588..6490064 (-) 477 WP_017692052.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACETMN_RS29745 (ACETMN_29745) ispD 6490061..6490756 (-) 696 WP_091020521.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACETMN_RS29750 (ACETMN_29750) - 6490839..6491924 (-) 1086 WP_047841132.1 PIN/TRAM domain-containing protein -
  ACETMN_RS29755 (ACETMN_29755) - 6492098..6492493 (+) 396 WP_017692049.1 hypothetical protein -
  ACETMN_RS29760 (ACETMN_29760) pssA 6492620..6493351 (-) 732 WP_091020519.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACETMN_RS29765 (ACETMN_29765) disA 6493397..6494473 (-) 1077 WP_091020517.1 DNA integrity scanning diadenylate cyclase DisA -
  ACETMN_RS29770 (ACETMN_29770) radA 6494487..6495854 (-) 1368 WP_036671578.1 DNA repair protein RadA Machinery gene
  ACETMN_RS29775 (ACETMN_29775) - 6496126..6498588 (-) 2463 WP_036607223.1 ATP-dependent Clp protease ATP-binding subunit -
  ACETMN_RS29780 (ACETMN_29780) - 6498773..6499843 (-) 1071 WP_091020515.1 protein arginine kinase -
  ACETMN_RS29785 (ACETMN_29785) - 6499872..6500396 (-) 525 WP_091020513.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49459.06 Da        Isoelectric Point: 6.9994

>NTDB_id=1052581 ACETMN_RS29770 WP_036671578.1 6494487..6495854(-) (radA) [Paenibacillus sp. M2]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMVEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSAELYVLCETNMERVEEA
VDQIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGVDLHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAVSIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1052581 ACETMN_RS29770 WP_036671578.1 6494487..6495854(-) (radA) [Paenibacillus sp. M2]
GTGGCCAAAGTTAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAGTGGTACGGTAAGTGTCCGGGTTG
TCAGTCATGGAATTCAATGGTGGAAGAAACAGAGACGGTGGTCAAAACACAAGGGAGAAATTCTCCTCTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAACCGCGTGTACAGACTGGAATCGGAGAGTTGAACCGG
GTATTGGGTGGCGGAATTGTTCCGGGTTCACTCGTTCTGGTGGGCGGAGATCCGGGTATCGGTAAATCAACGTTGATGTT
GCAGACGTCCCATGCTTTGACGCATTCGGGTTTGCGTGTGTTATATGTTTCCGGTGAGGAATCAGTCAAGCAGACTAAAT
TGCGGGCAGACCGCCTCGGGGCACTCTCTGCCGAGTTGTATGTATTGTGTGAAACCAATATGGAACGCGTAGAGGAAGCG
GTGGATCAGATCCAGCCGCATTTTCTGGTCATCGACTCCATTCAGACGGTATATCTTCCCGAAGTTACCAGTGCGCCGGG
TAGTGTAGCACAGGTAAGGGAATGTACGTCAAGGTTCATGCGGATTGCCAAAGGCAGAGGCATTGCAACGGTTCTTGTGG
GGCATGTTACCAAAGAAGGTGCCATTGCCGGTCCACGTATGTTAGAACATATGGTGGATTGCGTGCTTTATTTTGAAGGA
GAACGGCATCATACGTATCGCCTGCTGCGTGCGGTGAAGAACCGTTTTGGTTCCACCAATGAGATTGGTATTTTTGAAAT
GGGTGAGGATGGACTTCGTGAGGTGGGCAATCCGTCCGAACTCTTTTTGTCAGAACGTCCACTGGGTGTAGCAGGTTCAA
CGGTAGTTGCCAGTATGGAGGGTACACGCCCTCTGCTCGTGGAATTGCAGGCGTTGATCTCAACCACCCATTTCCCTTCT
CCCCGCCGTATGGCAACAGGGGTAGATCTGCATCGGTTAAATCTTATCATTGCAGTGCTGGAGAAACGGATGGGTATGTT
CTTACAGACCCAGGATGCGTATCTGAACGTGGCTGGTGGAGTACGATTGGATGAGCCCGCTGTAGATTTGGCGGTTGCCG
TCAGCATTGCATCCAGTTTGAGAGATGTACCGACCAAGCCGGACGACGTCATCTTTGGCGAGATCGGTCTGACAGGTGAA
GTTCGAGCCGTATCACGGGCCGAACAACGAGTGAAGGAAGCCGCAAAGTTGGGCTTCAAACGAGTCATTTTACCGGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.284

100

0.657
  radA Streptococcus pneumoniae Rx1

59.333

98.901

0.587
  radA Streptococcus pneumoniae D39

59.333

98.901

0.587
  radA Streptococcus pneumoniae R6

59.333

98.901

0.587
  radA Streptococcus pneumoniae TIGR4

59.333

98.901

0.587
  radA Streptococcus mitis NCTC 12261

59.333

98.901

0.587
  radA Streptococcus mitis SK321

59.333

98.901

0.587

Multiple sequence alignment