Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACETK2_RS02285 Genome accession   NZ_CP169640
Coordinates   511932..513314 (-) Length   460 a.a.
NCBI ID   WP_012773160.1    Uniprot ID   A0AAW3SUS5
Organism   Pectobacterium aroidearum strain Pc3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 506932..518314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK2_RS02255 pepP 507086..508411 (-) 1326 WP_012773155.1 Xaa-Pro aminopeptidase -
  ACETK2_RS02260 - 508502..509089 (-) 588 WP_012773156.1 YecA family protein -
  ACETK2_RS02265 zapA 509282..509611 (+) 330 WP_012773157.1 cell division protein ZapA -
  ACETK2_RS02275 - 509909..510550 (+) 642 WP_012773158.1 5-formyltetrahydrofolate cyclo-ligase -
  ACETK2_RS02280 nadR 510547..511800 (-) 1254 WP_012773159.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ACETK2_RS02285 radA 511932..513314 (-) 1383 WP_012773160.1 DNA repair protein RadA Machinery gene
  ACETK2_RS02290 serB 513332..514309 (-) 978 WP_012773161.1 phosphoserine phosphatase -
  ACETK2_RS02295 - 514466..515164 (+) 699 WP_012773162.1 YtjB family periplasmic protein -
  ACETK2_RS02300 - 515219..516136 (-) 918 WP_012773163.1 hypothetical protein -
  ACETK2_RS02305 prfC 516442..518031 (+) 1590 WP_012773164.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49608.13 Da        Isoelectric Point: 7.4218

>NTDB_id=1052537 ACETK2_RS02285 WP_012773160.1 511932..513314(-) (radA) [Pectobacterium aroidearum strain Pc3]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1052537 ACETK2_RS02285 WP_012773160.1 511932..513314(-) (radA) [Pectobacterium aroidearum strain Pc3]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTCGCATCGGCGTCAGTATCACGTTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAGCTTTCAGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCGATTCTGATCGGTGGTAACCCCGGTGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TACAGCAGGTAGCGATGCGGGCACACCGCCTCAATTTACCGACCCAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCAGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAAGACGGCTCGCTCGCCGGACCGAAAGTATTAGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGACTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAACT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAAGTCAGCAATCCGTCGGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCGCTGGTTGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ACCTCGCGTTGCTATTATCACTGGTTTCCAGCTTCCGCGACCGCCCGCTACCACAGGATCTCGTCATCTTCGGTGAGGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43

Multiple sequence alignment