Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | R8665_RS06025 | Genome accession | NZ_AP028386 |
| Coordinates | 1148109..1149068 (+) | Length | 319 a.a. |
| NCBI ID | WP_317676760.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain BCH-11348 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1129576..1158405 | 1148109..1149068 | within | 0 |
Gene organization within MGE regions
Location: 1129576..1158405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8665_RS05930 (B11348_11570) | pglI | 1129576..1130505 (-) | 930 | WP_002854071.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| R8665_RS05935 (B11348_11580) | pglH | 1130498..1131577 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| R8665_RS05940 (B11348_11590) | pglK | 1131574..1133268 (-) | 1695 | WP_317676748.1 | ABC-type lipopolysaccharide transporter PglK | - |
| R8665_RS05945 (B11348_11600) | galE | 1133262..1134248 (-) | 987 | WP_002874249.1 | UDP-glucose 4-epimerase GalE | - |
| R8665_RS05950 (B11348_11610) | - | 1134307..1135101 (-) | 795 | WP_087703791.1 | 3'-5' exonuclease | - |
| R8665_RS05955 (B11348_11620) | waaC | 1135167..1136195 (+) | 1029 | WP_087699827.1 | lipopolysaccharide heptosyltransferase I | - |
| R8665_RS05960 (B11348_11630) | htrB | 1136185..1137072 (+) | 888 | WP_317676751.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| R8665_RS05965 (B11348_11640) | - | 1137069..1138616 (+) | 1548 | WP_317676752.1 | glycosyltransferase family 2 protein | - |
| R8665_RS05970 (B11348_11650) | - | 1138620..1139813 (+) | 1194 | WP_317676753.1 | glycosyltransferase family 2 protein | - |
| R8665_RS05975 (B11348_11670) | - | 1139861..1140923 (+) | 1063 | Protein_1160 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| R8665_RS05980 | - | 1140895..1141698 (-) | 804 | Protein_1161 | glycosyltransferase family 2 protein | - |
| R8665_RS05985 (B11348_11690) | - | 1141787..1142662 (+) | 876 | WP_317676755.1 | alpha-2,3-sialyltransferase | - |
| R8665_RS05990 (B11348_11700) | neuB | 1142663..1143703 (+) | 1041 | WP_317676756.1 | N-acetylneuraminate synthase | - |
| R8665_RS05995 (B11348_11710) | neuC | 1143700..1144824 (+) | 1125 | WP_002869019.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| R8665_RS06000 (B11348_11720) | - | 1144817..1145434 (+) | 618 | WP_019260375.1 | glycosyltransferase | - |
| R8665_RS06005 (B11348_11730) | - | 1145431..1145763 (+) | 333 | WP_019260376.1 | hypothetical protein | - |
| R8665_RS06010 (B11348_11740) | - | 1145760..1146425 (+) | 666 | WP_317676758.1 | cytidylyltransferase domain-containing protein | - |
| R8665_RS06015 (B11348_11750) | - | 1146413..1147246 (+) | 834 | WP_052802044.1 | CatB-related O-acetyltransferase | - |
| R8665_RS06020 (B11348_11760) | waaV | 1147238..1148050 (-) | 813 | WP_317676759.1 | glycosyltransferase family 2 protein | - |
| R8665_RS06025 (B11348_11770) | waaF | 1148109..1149068 (+) | 960 | WP_317676760.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| R8665_RS06030 (B11348_11780) | gmhA | 1149049..1149609 (-) | 561 | WP_317676761.1 | D-sedoheptulose 7-phosphate isomerase | - |
| R8665_RS06035 (B11348_11790) | rfaE1 | 1149606..1150991 (-) | 1386 | WP_317676763.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| R8665_RS06040 (B11348_11800) | rfaD | 1150984..1151937 (-) | 954 | WP_317676764.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| R8665_RS06045 (B11348_11810) | gmhB | 1151938..1152498 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| R8665_RS06050 (B11348_11820) | - | 1152580..1152882 (+) | 303 | WP_002852762.1 | c-type cytochrome | - |
| R8665_RS06055 (B11348_11830) | ccoS | 1152905..1153111 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| R8665_RS06060 (B11348_11840) | - | 1153108..1155465 (-) | 2358 | WP_079460249.1 | heavy metal translocating P-type ATPase | - |
| R8665_RS06065 (B11348_11850) | rho | 1155574..1156872 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| R8665_RS06070 (B11348_11860) | dnaX | 1156876..1158405 (+) | 1530 | WP_044306114.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36750.27 Da Isoelectric Point: 10.3205
>NTDB_id=105252 R8665_RS06025 WP_317676760.1 1148109..1149068(+) (waaF) [Campylobacter jejuni strain BCH-11348]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKTHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLTCMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKTHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLTCMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=105252 R8665_RS06025 WP_317676760.1 1148109..1149068(+) (waaF) [Campylobacter jejuni strain BCH-11348]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAACTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAACGACAGT
GGTCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCATTTAGATCTAACTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAACTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAACGACAGT
GGTCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCATTTAGATCTAACTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.671 |
100 |
0.947 |