Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB3Y97_RS02880 Genome accession   NZ_OZ061310
Coordinates   541812..543776 (+) Length   654 a.a.
NCBI ID   WP_367300712.1    Uniprot ID   -
Organism   Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 536812..548776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y97_RS02855 - 536998..537783 (+) 786 WP_367300709.1 hypothetical protein -
  AB3Y97_RS02860 - 537958..539031 (+) 1074 WP_223823011.1 AAA family ATPase -
  AB3Y97_RS02865 - 539128..540081 (+) 954 WP_367300710.1 2-dehydropantoate 2-reductase -
  AB3Y97_RS02870 msrA 540135..540662 (+) 528 WP_367300711.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AB3Y97_RS02875 rnz 540835..541800 (+) 966 WP_150280377.1 ribonuclease Z -
  AB3Y97_RS02880 recJ 541812..543776 (+) 1965 WP_367300712.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB3Y97_RS02885 - 543894..544424 (+) 531 WP_150289088.1 adenine phosphoribosyltransferase -
  AB3Y97_RS02890 - 544525..545223 (-) 699 WP_367300713.1 SAM-dependent methyltransferase -
  AB3Y97_RS02895 - 545213..545785 (-) 573 WP_367300714.1 DsbA family protein -
  AB3Y97_RS02900 - 546063..546641 (+) 579 WP_014974079.1 GTP pyrophosphokinase family protein -
  AB3Y97_RS02905 - 546638..547435 (+) 798 WP_014974080.1 NAD kinase -
  AB3Y97_RS02910 - 547492..548394 (+) 903 WP_014974081.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 71997.10 Da        Isoelectric Point: 5.0244

>NTDB_id=1052508 AB3Y97_RS02880 WP_367300712.1 541812..543776(+) (recJ) [Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809]
MSQKNWHILPQPSEKSVKQLTKQLNIDHLTATIVAQKGYTTPETAFQYLQPSIEQLHDPMALHDMDKAFERLTEAAFGGE
KIVVYGDYDLDGVTSTAVMVEALEVLGADVTAYIPNRFNDGYGPNIDVYKRLIADGAQVIVTVDNGMSGHEAVTYAMSQG
VDVIITDHHEMAPTLPEAYAVIHPRHPEGHYPFHDLSGVGVAFKVAQALLTDGQAISDRSDLPTEMLDLVALGEIADMVS
LTDENRTLVSWGLKQLSTSPRPGLSALLKNAGQAANEPIISETVSFKIAPRLNAVGRLGDAKLALDLLLSQDPDEAAELA
SQIEAINAQRQEIVEEVFGAAKQMALSEAHQNDEVLIISGIDWHQGVLGIVASRLVELLHKPAIVLSFVAGNYKGSGRSY
GDFDLYALMSQYRDLYDTFGGHANALGLAISEDNLVILRQRIATLSALNIREKPVTINLTLPASDMTTSLYDGLTLLEPF
GTDNPQPVFEVKQAPITKVITMGKSKQHIKLTLNNQVDAVGFNHPDWAASMLNQKSMSFVATMGLNYFRGKKQLQLLLTD
VDLPAIVENDAHKQFFSQVYKFIYTHQDLNFAQNLDKIAKQLYINKTDLNIMVQVFIELGFVQVINSGFVKIIPNAPQRD
LTESTTYQKFLAKR

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1052508 AB3Y97_RS02880 WP_367300712.1 541812..543776(+) (recJ) [Leuconostoc carnosum isolate Leuconostoc carnosum CIRM-BIA2809]
ATGAGTCAAAAAAATTGGCATATACTACCACAACCATCTGAAAAATCCGTTAAGCAACTGACAAAACAATTAAATATTGA
TCATTTAACTGCGACGATTGTCGCACAAAAAGGTTACACAACACCAGAGACGGCGTTTCAGTATTTACAACCAAGTATTG
AACAGCTTCATGATCCTATGGCACTACATGACATGGATAAAGCTTTTGAACGCTTAACTGAGGCTGCATTTGGTGGTGAA
AAGATTGTTGTTTATGGTGATTATGATTTAGATGGGGTCACAAGCACAGCAGTTATGGTGGAAGCGCTTGAAGTATTAGG
CGCCGATGTCACAGCTTATATTCCCAATCGTTTCAATGACGGTTATGGCCCCAACATTGATGTTTATAAACGGTTGATTG
CTGACGGTGCGCAAGTGATTGTGACAGTCGACAATGGTATGAGCGGGCATGAAGCCGTTACTTATGCCATGAGTCAGGGT
GTTGATGTGATTATTACTGATCATCATGAAATGGCACCTACATTACCTGAAGCTTACGCAGTGATACATCCAAGACACCC
CGAAGGTCATTATCCATTTCATGATTTATCAGGTGTAGGCGTGGCCTTCAAGGTCGCACAAGCTTTACTGACGGATGGGC
AGGCGATTAGTGATCGTTCCGATCTACCAACGGAAATGCTGGATTTAGTAGCTTTAGGTGAAATTGCCGATATGGTTTCA
TTAACTGATGAAAATCGGACACTTGTTTCCTGGGGATTAAAGCAACTAAGTACCAGTCCACGACCAGGATTATCTGCCTT
GCTCAAAAATGCTGGTCAAGCAGCCAATGAACCTATTATTTCAGAAACTGTTTCCTTTAAAATCGCGCCACGCTTAAATG
CTGTGGGACGTTTAGGGGATGCTAAATTAGCCCTTGATTTACTTTTGAGTCAAGATCCTGATGAAGCAGCGGAATTGGCA
TCACAAATTGAAGCTATTAATGCGCAACGTCAAGAAATTGTTGAAGAAGTATTTGGTGCGGCTAAACAAATGGCTTTATC
TGAAGCACACCAAAACGACGAGGTTTTGATTATATCAGGGATTGATTGGCATCAAGGTGTTTTAGGTATTGTTGCCAGTC
GGTTAGTTGAATTATTACACAAGCCAGCCATTGTTTTAAGTTTTGTTGCTGGTAATTATAAAGGGTCTGGTCGTAGTTAT
GGTGATTTTGATCTTTATGCATTGATGAGTCAGTATCGTGACTTATATGATACCTTTGGTGGGCATGCGAATGCTTTGGG
ATTAGCGATTTCAGAAGATAATTTAGTGATATTGCGTCAGCGAATCGCTACATTATCAGCACTTAACATTCGAGAAAAGC
CTGTGACAATTAATTTGACACTACCCGCAAGTGATATGACAACATCGCTTTATGATGGATTAACGCTCTTGGAGCCATTT
GGAACCGATAACCCACAGCCGGTTTTTGAGGTTAAGCAAGCACCAATTACCAAGGTGATCACAATGGGGAAATCTAAACA
GCATATTAAGCTGACGTTGAACAACCAAGTGGACGCTGTAGGCTTTAACCATCCTGACTGGGCTGCGAGCATGCTGAATC
AAAAAAGCATGTCCTTTGTTGCGACAATGGGGTTGAACTATTTTCGTGGTAAGAAACAGCTACAATTGCTATTAACGGAT
GTTGATTTGCCAGCAATTGTTGAAAATGATGCACATAAACAATTTTTTTCGCAAGTATACAAGTTTATTTACACACACCA
AGACTTGAATTTTGCGCAAAACTTGGATAAAATAGCAAAGCAACTATATATCAACAAAACTGACCTCAATATTATGGTGC
AAGTCTTTATCGAACTTGGTTTTGTGCAAGTGATTAATAGTGGGTTTGTCAAAATTATTCCTAATGCACCACAACGAGAC
TTAACAGAGTCAACGACTTATCAAAAGTTTTTGGCGAAACGTTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(573-653)

DHHA1 domain (DHHA1)

(324-441)

DHH family (DHH)

(81-233)

RecJ OB domain (RecJ_OB)

(457-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

37.741

100

0.419