Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8665_RS03640 Genome accession   NZ_AP028386
Coordinates   687697..688134 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-11348     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 682697..693134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS03620 (B11348_07050) kdpD 683179..685116 (+) 1938 WP_317677232.1 sensor histidine kinase -
  R8665_RS03625 (B11348_07060) uvrB 685111..687084 (-) 1974 WP_317677233.1 excinuclease ABC subunit UvrB -
  R8665_RS03630 (B11348_07070) - 687238..687468 (+) 231 WP_002852327.1 hypothetical protein -
  R8665_RS03635 (B11348_07080) - 687458..687700 (+) 243 WP_002854947.1 hypothetical protein -
  R8665_RS03640 (B11348_07090) Cj0683 687697..688134 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8665_RS03645 (B11348_07100) priA 688116..689969 (+) 1854 WP_079005308.1 primosomal protein N' -
  R8665_RS03650 (B11348_07110) cipA 689979..691373 (-) 1395 WP_317677234.1 DUF2972 domain-containing protein -
  R8665_RS03655 (B11348_07120) ispG 691519..692592 (+) 1074 WP_004316745.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=105247 R8665_RS03640 WP_002852324.1 687697..688134(+) (Cj0683) [Campylobacter jejuni strain BCH-11348]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=105247 R8665_RS03640 WP_002852324.1 687697..688134(+) (Cj0683) [Campylobacter jejuni strain BCH-11348]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment