Detailed information    

insolico Bioinformatically predicted

Overview


Name   recO   Type   Machinery gene
Locus tag   SPAP1_RS00185 Genome accession   NZ_CP007537
Coordinates   27761..28516 (+) Length   251 a.a.
NCBI ID   WP_002986719.1    Uniprot ID   A2RBY9
Organism   Streptococcus pyogenes strain AP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 22761..33516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAP1_RS10610 - 24136..24417 (-) 282 WP_111689438.1 transposase -
  SPAP1_RS00175 (SPAP1_00175) pcsB 25164..26360 (+) 1197 WP_010921769.1 peptidoglycan hydrolase PcsB -
  SPAP1_RS00180 (SPAP1_00180) - 26613..27575 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  SPAP1_RS00185 (SPAP1_00185) recO 27761..28516 (+) 756 WP_002986719.1 DNA repair protein RecO Machinery gene
  SPAP1_RS00190 (SPAP1_00190) plsX 28619..29626 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  SPAP1_RS00195 (SPAP1_00195) - 29619..29861 (+) 243 WP_010921770.1 phosphopantetheine-binding protein -
  SPAP1_RS00200 (SPAP1_00200) purC 30012..30716 (+) 705 WP_015055882.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence


Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=105244 SPAP1_RS00185 WP_002986719.1 27761..28516(+) (recO) [Streptococcus pyogenes strain AP1]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=105244 SPAP1_RS00185 WP_002986719.1 27761..28516(+) (recO) [Streptococcus pyogenes strain AP1]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A2RBY9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602


Multiple sequence alignment