Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8574_RS08060 Genome accession   NZ_AP028385
Coordinates   1555939..1557120 (-) Length   393 a.a.
NCBI ID   WP_057041182.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11320     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550939..1562120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8574_RS08030 (B11320_16080) - 1551484..1551825 (+) 342 WP_002784057.1 hypothetical protein -
  R8574_RS08035 (B11320_16090) flgM 1551888..1552085 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8574_RS08040 (B11320_16100) - 1552127..1552561 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8574_RS08045 (B11320_16110) flgK 1552571..1554397 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  R8574_RS08050 (B11320_16120) - 1554414..1555178 (+) 765 WP_317647633.1 TIGR02757 family protein -
  R8574_RS08055 (B11320_16130) - 1555182..1555952 (+) 771 WP_002873601.1 TSUP family transporter -
  R8574_RS08060 (B11320_16140) ctsF 1555939..1557120 (-) 1182 WP_057041182.1 type II secretion system F family protein Machinery gene
  R8574_RS08065 (B11320_16150) ctsE 1557117..1558676 (-) 1560 WP_057041180.1 GspE/PulE family protein Machinery gene
  R8574_RS08070 (B11320_16160) ctsX 1558666..1559253 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8574_RS08075 (B11320_16170) ctsP 1559257..1559865 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8574_RS08080 (B11320_16180) ctsD 1559858..1561270 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8574_RS08085 (B11320_16190) ctsR 1561248..1561559 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45715.36 Da        Isoelectric Point: 8.8933

>NTDB_id=105233 R8574_RS08060 WP_057041182.1 1555939..1557120(-) (ctsF) [Campylobacter jejuni strain BCH-11320]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105233 R8574_RS08060 WP_057041182.1 1555939..1557120(-) (ctsF) [Campylobacter jejuni strain BCH-11320]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment