Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACEPM6_RS03225 Genome accession   NZ_CP169570
Coordinates   626723..627859 (-) Length   378 a.a.
NCBI ID   WP_375156436.1    Uniprot ID   -
Organism   Bacillus velezensis strain CIMT3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 616892..662006 626723..627859 within 0


Gene organization within MGE regions


Location: 616892..662006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM6_RS03145 (ACEPM6_03145) - 617464..617766 (+) 303 WP_106503132.1 hypothetical protein -
  ACEPM6_RS03150 (ACEPM6_03150) - 617914..618156 (-) 243 WP_041481751.1 hypothetical protein -
  ACEPM6_RS03155 (ACEPM6_03155) - 618266..618928 (+) 663 WP_014417662.1 hypothetical protein -
  ACEPM6_RS03160 (ACEPM6_03160) - 620015..620428 (-) 414 WP_041481752.1 hypothetical protein -
  ACEPM6_RS03165 (ACEPM6_03165) - 620628..620972 (-) 345 WP_101293893.1 hypothetical protein -
  ACEPM6_RS03170 (ACEPM6_03170) - 621003..621158 (-) 156 WP_165913834.1 hypothetical protein -
  ACEPM6_RS03175 (ACEPM6_03175) - 621148..621513 (-) 366 WP_327829517.1 hypothetical protein -
  ACEPM6_RS03180 (ACEPM6_03180) - 621661..622062 (-) 402 WP_174747601.1 hypothetical protein -
  ACEPM6_RS03185 (ACEPM6_03185) - 622205..622438 (+) 234 WP_174747600.1 helix-turn-helix transcriptional regulator -
  ACEPM6_RS03190 (ACEPM6_03190) - 622520..622801 (+) 282 WP_174747599.1 hypothetical protein -
  ACEPM6_RS03195 (ACEPM6_03195) - 622854..623099 (-) 246 WP_105322064.1 helix-turn-helix domain-containing protein -
  ACEPM6_RS03200 (ACEPM6_03200) - 623602..624321 (+) 720 WP_105322065.1 hypothetical protein -
  ACEPM6_RS03205 (ACEPM6_03205) - 624357..624665 (-) 309 WP_234015358.1 hypothetical protein -
  ACEPM6_RS03210 (ACEPM6_03210) - 624678..626102 (-) 1425 WP_375156435.1 lipase -
  ACEPM6_RS03215 (ACEPM6_03215) - 626152..626517 (+) 366 WP_014417672.1 DUF1433 domain-containing protein -
  ACEPM6_RS03220 (ACEPM6_03220) - 626560..626733 (-) 174 WP_169061491.1 hypothetical protein -
  ACEPM6_RS03225 (ACEPM6_03225) rapC 626723..627859 (-) 1137 WP_375156436.1 aspartate phosphatase Regulator
  ACEPM6_RS03230 (ACEPM6_03230) - 628040..628870 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  ACEPM6_RS03235 (ACEPM6_03235) - 629035..629964 (-) 930 WP_266025767.1 SH3 domain-containing protein -
  ACEPM6_RS03240 (ACEPM6_03240) - 630055..632673 (-) 2619 WP_375156437.1 hypothetical protein -
  ACEPM6_RS03245 (ACEPM6_03245) - 632746..639576 (-) 6831 WP_375156438.1 phage tail tape measure protein -
  ACEPM6_RS03250 (ACEPM6_03250) - 640321..641454 (-) 1134 WP_347455086.1 GIY-YIG nuclease family protein -
  ACEPM6_RS03255 (ACEPM6_03255) - 641629..642507 (+) 879 WP_375156439.1 tyrosine-type recombinase/integrase -
  ACEPM6_RS03260 (ACEPM6_03260) - 642634..642843 (+) 210 WP_072589059.1 hypothetical protein -
  ACEPM6_RS03265 (ACEPM6_03265) - 642888..643181 (+) 294 WP_072589060.1 hypothetical protein -
  ACEPM6_RS03270 (ACEPM6_03270) - 643280..643489 (+) 210 WP_072589061.1 hypothetical protein -
  ACEPM6_RS03275 (ACEPM6_03275) - 643486..643782 (-) 297 WP_072589062.1 hypothetical protein -
  ACEPM6_RS03280 (ACEPM6_03280) - 643832..643999 (-) 168 WP_014417681.1 hypothetical protein -
  ACEPM6_RS03285 (ACEPM6_03285) - 644273..644938 (+) 666 WP_014471784.1 hypothetical protein -
  ACEPM6_RS03290 (ACEPM6_03290) - 644950..645438 (-) 489 WP_014471785.1 hypothetical protein -
  ACEPM6_RS03295 (ACEPM6_03295) - 645435..645596 (-) 162 WP_014471786.1 XkdX family protein -
  ACEPM6_RS03300 (ACEPM6_03300) - 645597..645980 (-) 384 WP_014471787.1 hypothetical protein -
  ACEPM6_RS03305 (ACEPM6_03305) - 645977..647296 (-) 1320 WP_014471788.1 hypothetical protein -
  ACEPM6_RS03310 (ACEPM6_03310) - 647335..647904 (-) 570 WP_014417686.1 HNH endonuclease -
  ACEPM6_RS03315 (ACEPM6_03315) - 647915..648109 (-) 195 WP_014471790.1 hypothetical protein -
  ACEPM6_RS03320 (ACEPM6_03320) - 648726..651572 (-) 2847 WP_234015359.1 hypothetical protein -
  ACEPM6_RS03325 (ACEPM6_03325) - 651590..653494 (-) 1905 WP_105322071.1 hypothetical protein -
  ACEPM6_RS03330 (ACEPM6_03330) - 653809..654771 (+) 963 WP_014417689.1 AimR family lysis-lysogeny pheromone receptor -
  ACEPM6_RS03335 (ACEPM6_03335) - 654815..654937 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  ACEPM6_RS03340 (ACEPM6_03340) - 655044..655469 (+) 426 WP_375156440.1 hypothetical protein -
  ACEPM6_RS03345 (ACEPM6_03345) - 655648..655806 (+) 159 WP_157829251.1 hypothetical protein -
  ACEPM6_RS03350 (ACEPM6_03350) - 655905..656342 (+) 438 WP_375156441.1 hypothetical protein -
  ACEPM6_RS03355 (ACEPM6_03355) - 656359..656616 (+) 258 WP_057079936.1 hypothetical protein -
  ACEPM6_RS03360 (ACEPM6_03360) - 656665..656844 (+) 180 WP_375156442.1 hypothetical protein -
  ACEPM6_RS03365 (ACEPM6_03365) - 656933..657469 (+) 537 WP_375156443.1 hypothetical protein -
  ACEPM6_RS03370 (ACEPM6_03370) - 657466..657888 (+) 423 WP_208557824.1 hypothetical protein -
  ACEPM6_RS03375 (ACEPM6_03375) - 657951..658268 (+) 318 WP_375156444.1 hypothetical protein -
  ACEPM6_RS03380 (ACEPM6_03380) - 658328..658915 (+) 588 WP_375156445.1 hypothetical protein -
  ACEPM6_RS03385 (ACEPM6_03385) - 659213..659932 (+) 720 WP_375156446.1 hypothetical protein -
  ACEPM6_RS03390 (ACEPM6_03390) - 660297..662006 (+) 1710 WP_161619852.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44655.96 Da        Isoelectric Point: 4.8741

>NTDB_id=1052310 ACEPM6_RS03225 WP_375156436.1 626723..627859(-) (rapC) [Bacillus velezensis strain CIMT3]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLVYEQNGYEHANRLLDILFMLAKTNFKANKKTEGTAVYNHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILTYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1052310 ACEPM6_RS03225 WP_375156436.1 626723..627859(-) (rapC) [Bacillus velezensis strain CIMT3]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAGCCAAAAACCATGAATGAAGAACGCCCTGAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGCTGTCACTTGTAGCCG
ATGAAATTGAGCGAGCGGAGTTTCATTACAAAGTTGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATTGAAAGCTATAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCATTCGTCATTGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCACGATTAGCCGGATCCGCTCTATATAATTTAGGGATTTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGGTCTATGAGCAAAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGCAAATAAGAAAACTGAAGGAACAGCTGTTTATAATCATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTAAATGCCCTTTACATTGACGATAACAAAGAAACACTAAAT
GAGATTCTTACTTATTTAGAATTTAAAACAATGTTTTCCGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-248)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.407

100

0.458

Multiple sequence alignment