Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ACE2AN_RS08540 Genome accession   NZ_CP169564
Coordinates   1704604..1705671 (-) Length   355 a.a.
NCBI ID   WP_050250486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 6_2F1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699604..1710671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE2AN_RS08525 treR 1701409..1702119 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  ACE2AN_RS08530 - 1702274..1703592 (+) 1319 WP_375060529.1 ISL3 family transposase -
  ACE2AN_RS08535 amiF 1703667..1704593 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  ACE2AN_RS08540 amiE 1704604..1705671 (-) 1068 WP_050250486.1 ABC transporter ATP-binding protein Regulator
  ACE2AN_RS08545 amiD 1705680..1706606 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  ACE2AN_RS08550 amiC 1706606..1708102 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  ACE2AN_RS08555 amiA 1708169..1710148 (-) 1980 WP_050250487.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39476.06 Da        Isoelectric Point: 4.8727

>NTDB_id=1052197 ACE2AN_RS08540 WP_050250486.1 1704604..1705671(-) (amiE) [Streptococcus pneumoniae strain 6_2F1]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAVDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1052197 ACE2AN_RS08540 WP_050250486.1 1704604..1705671(-) (amiE) [Streptococcus pneumoniae strain 6_2F1]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCGTTGACTACATGAATAAGGTTGGCATTCCAGATGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTTTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.887

100

0.879
  amiE Streptococcus thermophilus LMG 18311

86.197

100

0.862
  amiE Streptococcus thermophilus LMD-9

86.197

100

0.862
  oppD Streptococcus mutans UA159

54.545

99.155

0.541

Multiple sequence alignment