Detailed information
Bioinformatically predicted
Overview
| Name | rpoN/rpoN1 | Type | Machinery gene |
| Locus tag | ACEW7X_RS00400 | Genome accession | NZ_CP169556 |
| Coordinates | 108928..110313 (+) | Length | 461 a.a. |
| NCBI ID | WP_068373029.1 | Uniprot ID | A0A171KQP3 |
| Organism | Kerstersia gyiorum strain WCHKG1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 103928..115313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEW7X_RS00385 (ACEW7X_00385) | leuA | 104769..106472 (-) | 1704 | WP_127775500.1 | 2-isopropylmalate synthase | - |
| ACEW7X_RS00390 (ACEW7X_00390) | - | 107668..108243 (+) | 576 | WP_165389921.1 | TetR/AcrR family transcriptional regulator | - |
| ACEW7X_RS00395 (ACEW7X_00395) | - | 108291..108896 (-) | 606 | WP_068372940.1 | hypothetical protein | - |
| ACEW7X_RS00400 (ACEW7X_00400) | rpoN/rpoN1 | 108928..110313 (+) | 1386 | WP_068373029.1 | RNA polymerase factor sigma-54 | Machinery gene |
| ACEW7X_RS00405 (ACEW7X_00405) | - | 110337..111533 (+) | 1197 | WP_420177484.1 | MFS transporter | - |
| ACEW7X_RS00410 (ACEW7X_00410) | - | 111621..111863 (+) | 243 | WP_068373026.1 | (2Fe-2S)-binding protein | - |
| ACEW7X_RS00415 (ACEW7X_00415) | bfr | 112284..112760 (+) | 477 | WP_068372934.1 | bacterioferritin | - |
| ACEW7X_RS00420 (ACEW7X_00420) | - | 112874..113515 (-) | 642 | WP_068372931.1 | hypothetical protein | - |
| ACEW7X_RS00425 (ACEW7X_00425) | - | 113555..115162 (-) | 1608 | WP_068372928.1 | peptide chain release factor 3 | - |
Sequence
Protein
Download Length: 461 a.a. Molecular weight: 50926.20 Da Isoelectric Point: 4.8694
>NTDB_id=1052029 ACEW7X_RS00400 WP_068373029.1 108928..110313(+) (rpoN/rpoN1) [Kerstersia gyiorum strain WCHKG1]
MIRPALEIRQSQQLVLTPQLQQALRLLQLSSLDLQQEISQALTENPVLELESPEPAAESVAAEDLFSGGGGPRQDGDDDF
FPEAAATPSLREHLLGQISCTRASRRDLALMTVLIDELDDNGYLAASFEEILAYLPESLEVEQGELEAALALLQNMEPAG
IAARTMSECLLLQLRQPDAKVWPEARDAAIVALARRLCERHLDALAAGRLAFLCEELKCSPAEVRTAHALIRRLDPYPGR
AWTVPVADFAVPDVIAYRSGNGWRVRLNGDLVPRLSVNDAYVQALGQEPRGSYEGLQSHVQQARWLIRQVAQRFDTLLRV
STEIVARQQAFFESGMVALRPMVLREIAEALGMHESTISRATSSKYMATPHGTLELKRFFSTGVPAADGESASAASIQAM
MREMLDQEDPRKPLSDSQLMAKLAERGVELARRTVAKYREGMRVPTASQRKAMALMRMDDC
MIRPALEIRQSQQLVLTPQLQQALRLLQLSSLDLQQEISQALTENPVLELESPEPAAESVAAEDLFSGGGGPRQDGDDDF
FPEAAATPSLREHLLGQISCTRASRRDLALMTVLIDELDDNGYLAASFEEILAYLPESLEVEQGELEAALALLQNMEPAG
IAARTMSECLLLQLRQPDAKVWPEARDAAIVALARRLCERHLDALAAGRLAFLCEELKCSPAEVRTAHALIRRLDPYPGR
AWTVPVADFAVPDVIAYRSGNGWRVRLNGDLVPRLSVNDAYVQALGQEPRGSYEGLQSHVQQARWLIRQVAQRFDTLLRV
STEIVARQQAFFESGMVALRPMVLREIAEALGMHESTISRATSSKYMATPHGTLELKRFFSTGVPAADGESASAASIQAM
MREMLDQEDPRKPLSDSQLMAKLAERGVELARRTVAKYREGMRVPTASQRKAMALMRMDDC
Nucleotide
Download Length: 1386 bp
>NTDB_id=1052029 ACEW7X_RS00400 WP_068373029.1 108928..110313(+) (rpoN/rpoN1) [Kerstersia gyiorum strain WCHKG1]
ATGATACGACCCGCGCTGGAAATTCGCCAAAGTCAGCAGTTGGTGCTGACGCCACAGTTGCAACAGGCCTTGCGTCTCTT
GCAACTGTCGTCGCTGGACCTGCAACAGGAAATCTCGCAGGCGCTGACGGAAAACCCGGTTCTGGAGCTGGAATCCCCCG
AACCCGCCGCTGAGTCGGTGGCGGCCGAGGATCTGTTTTCCGGAGGCGGCGGCCCGCGCCAGGACGGCGACGACGATTTT
TTCCCCGAGGCTGCCGCCACGCCGTCGCTGCGCGAGCACCTGCTGGGGCAGATTTCCTGTACCCGTGCCAGCCGTCGTGA
CCTCGCGCTGATGACCGTGCTGATCGACGAATTGGACGATAACGGCTATCTTGCGGCCAGTTTCGAGGAAATCCTGGCCT
ATTTGCCGGAATCGCTCGAGGTTGAACAGGGCGAACTGGAAGCGGCATTGGCCTTGCTGCAGAATATGGAGCCGGCCGGT
ATTGCCGCCCGCACGATGTCCGAATGCCTGCTGCTGCAATTGCGGCAGCCGGATGCCAAGGTCTGGCCCGAGGCCCGCGA
CGCTGCCATTGTGGCGCTGGCGCGGCGCCTGTGCGAGAGGCATCTGGACGCCCTGGCGGCGGGCCGGCTTGCTTTCCTGT
GCGAGGAATTGAAGTGTTCGCCGGCCGAGGTGCGTACCGCGCACGCCCTGATCCGGCGGTTGGACCCTTACCCGGGCCGG
GCCTGGACGGTGCCGGTGGCGGATTTTGCGGTTCCGGACGTGATCGCTTACCGTAGCGGCAATGGCTGGCGTGTTCGCCT
GAATGGCGACCTGGTGCCGCGCCTGAGCGTGAATGATGCCTATGTGCAGGCTCTGGGGCAGGAGCCGCGCGGCAGTTACG
AGGGCCTGCAGTCCCATGTGCAGCAGGCGCGCTGGCTGATCCGACAGGTAGCGCAGCGCTTCGATACGCTGCTGCGCGTC
TCTACCGAGATCGTGGCGCGGCAGCAGGCTTTCTTCGAATCCGGCATGGTGGCGTTGCGGCCGATGGTGCTGCGCGAGAT
CGCCGAGGCCTTGGGCATGCACGAGTCCACGATATCGCGGGCGACCTCCAGCAAGTACATGGCGACGCCGCACGGCACGC
TGGAGCTCAAGCGGTTTTTCAGTACCGGCGTGCCGGCAGCCGATGGCGAGTCGGCTTCTGCGGCGTCGATTCAGGCGATG
ATGCGTGAAATGCTGGATCAGGAAGATCCGCGCAAGCCGCTGTCCGATAGCCAGCTGATGGCCAAGCTGGCCGAGCGCGG
TGTCGAGCTGGCGCGCCGCACGGTTGCCAAGTACCGGGAAGGCATGAGAGTGCCTACGGCTTCGCAGCGCAAGGCCATGG
CCTTGATGCGTATGGATGATTGTTGA
ATGATACGACCCGCGCTGGAAATTCGCCAAAGTCAGCAGTTGGTGCTGACGCCACAGTTGCAACAGGCCTTGCGTCTCTT
GCAACTGTCGTCGCTGGACCTGCAACAGGAAATCTCGCAGGCGCTGACGGAAAACCCGGTTCTGGAGCTGGAATCCCCCG
AACCCGCCGCTGAGTCGGTGGCGGCCGAGGATCTGTTTTCCGGAGGCGGCGGCCCGCGCCAGGACGGCGACGACGATTTT
TTCCCCGAGGCTGCCGCCACGCCGTCGCTGCGCGAGCACCTGCTGGGGCAGATTTCCTGTACCCGTGCCAGCCGTCGTGA
CCTCGCGCTGATGACCGTGCTGATCGACGAATTGGACGATAACGGCTATCTTGCGGCCAGTTTCGAGGAAATCCTGGCCT
ATTTGCCGGAATCGCTCGAGGTTGAACAGGGCGAACTGGAAGCGGCATTGGCCTTGCTGCAGAATATGGAGCCGGCCGGT
ATTGCCGCCCGCACGATGTCCGAATGCCTGCTGCTGCAATTGCGGCAGCCGGATGCCAAGGTCTGGCCCGAGGCCCGCGA
CGCTGCCATTGTGGCGCTGGCGCGGCGCCTGTGCGAGAGGCATCTGGACGCCCTGGCGGCGGGCCGGCTTGCTTTCCTGT
GCGAGGAATTGAAGTGTTCGCCGGCCGAGGTGCGTACCGCGCACGCCCTGATCCGGCGGTTGGACCCTTACCCGGGCCGG
GCCTGGACGGTGCCGGTGGCGGATTTTGCGGTTCCGGACGTGATCGCTTACCGTAGCGGCAATGGCTGGCGTGTTCGCCT
GAATGGCGACCTGGTGCCGCGCCTGAGCGTGAATGATGCCTATGTGCAGGCTCTGGGGCAGGAGCCGCGCGGCAGTTACG
AGGGCCTGCAGTCCCATGTGCAGCAGGCGCGCTGGCTGATCCGACAGGTAGCGCAGCGCTTCGATACGCTGCTGCGCGTC
TCTACCGAGATCGTGGCGCGGCAGCAGGCTTTCTTCGAATCCGGCATGGTGGCGTTGCGGCCGATGGTGCTGCGCGAGAT
CGCCGAGGCCTTGGGCATGCACGAGTCCACGATATCGCGGGCGACCTCCAGCAAGTACATGGCGACGCCGCACGGCACGC
TGGAGCTCAAGCGGTTTTTCAGTACCGGCGTGCCGGCAGCCGATGGCGAGTCGGCTTCTGCGGCGTCGATTCAGGCGATG
ATGCGTGAAATGCTGGATCAGGAAGATCCGCGCAAGCCGCTGTCCGATAGCCAGCTGATGGCCAAGCTGGCCGAGCGCGG
TGTCGAGCTGGCGCGCCGCACGGTTGCCAAGTACCGGGAAGGCATGAGAGTGCCTACGGCTTCGCAGCGCAAGGCCATGG
CCTTGATGCGTATGGATGATTGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoN/rpoN1 | Ralstonia pseudosolanacearum GMI1000 |
44.008 |
100 |
0.486 |