Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACE4RI_RS07935 Genome accession   NZ_OZ059820
Coordinates   1605858..1606940 (+) Length   360 a.a.
NCBI ID   WP_014532468.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E1_22S00622-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1600858..1611940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RI_RS07915 - 1601234..1602304 (-) 1071 WP_000460986.1 GGDEF domain-containing protein -
  ACE4RI_RS07920 - 1602622..1603677 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  ACE4RI_RS07925 - 1603843..1604484 (-) 642 WP_000192949.1 YigZ family protein -
  ACE4RI_RS07930 fakB1 1604628..1605494 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  ACE4RI_RS07935 comFA 1605858..1606940 (+) 1083 WP_014532468.1 DEAD/DEAH box helicase Machinery gene
  ACE4RI_RS07940 - 1606933..1607607 (+) 675 WP_001057961.1 ComF family protein -
  ACE4RI_RS07945 hpf 1607668..1608240 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACE4RI_RS07950 secA 1608654..1611185 (+) 2532 WP_031775871.1 preprotein translocase subunit SecA -
  ACE4RI_RS07955 - 1611227..1611325 (+) 99 WP_374731584.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42024.50 Da        Isoelectric Point: 9.6802

>NTDB_id=1052001 ACE4RI_RS07935 WP_014532468.1 1605858..1606940(+) (comFA) [Staphylococcus aureus isolate E1_22S00622-1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1052001 ACE4RI_RS07935 WP_014532468.1 1605858..1606940(+) (comFA) [Staphylococcus aureus isolate E1_22S00622-1]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369

Multiple sequence alignment