Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8610_RS05615 Genome accession   NZ_AP028384
Coordinates   1096201..1097151 (+) Length   316 a.a.
NCBI ID   WP_052775522.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11253     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091201..1102151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS05585 (B11253_10970) neuB 1091704..1092744 (+) 1041 WP_002922930.1 N-acetylneuraminate synthase -
  R8610_RS05590 (B11253_10980) neuC 1092741..1093859 (+) 1119 WP_002922931.1 UDP-N-acetylglucosamine 2-epimerase -
  R8610_RS05595 (B11253_10990) - 1093856..1094521 (+) 666 WP_002922934.1 cytidylyltransferase domain-containing protein -
  R8610_RS05600 (B11253_11000) - 1094509..1094682 (+) 174 WP_002896733.1 hypothetical protein -
  R8610_RS05605 (B11253_11010) - 1094724..1095338 (+) 615 WP_269468790.1 CatB-related O-acetyltransferase -
  R8610_RS05610 (B11253_11020) - 1095330..1096142 (-) 813 WP_002922943.1 glycosyltransferase family 2 protein -
  R8610_RS05615 (B11253_11030) waaF 1096201..1097151 (+) 951 WP_052775522.1 lipopolysaccharide heptosyltransferase II Regulator
  R8610_RS08945 (B11253_11040) - 1097137..1097481 (-) 345 WP_250499973.1 glycosyltransferase family 25 protein -
  R8610_RS08950 (B11253_11050) - 1097453..1097911 (-) 459 WP_250499971.1 glycosyltransferase family 25 protein -
  R8610_RS05625 (B11253_11060) gmhA 1097911..1098471 (-) 561 WP_002922730.1 D-sedoheptulose 7-phosphate isomerase -
  R8610_RS05630 (B11253_11070) rfaE1 1098468..1099853 (-) 1386 WP_002922733.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8610_RS05635 (B11253_11080) rfaD 1099846..1100799 (-) 954 WP_002922734.1 ADP-glyceromanno-heptose 6-epimerase -
  R8610_RS05640 (B11253_11090) gmhB 1100800..1101360 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  R8610_RS05645 (B11253_11100) - 1101442..1101744 (+) 303 WP_002852762.1 c-type cytochrome -
  R8610_RS05650 (B11253_11110) ccoS 1101767..1101973 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36293.94 Da        Isoelectric Point: 10.3523

>NTDB_id=105198 R8610_RS05615 WP_052775522.1 1096201..1097151(+) (waaF) [Campylobacter jejuni strain BCH-11253]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQTRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=105198 R8610_RS05615 WP_052775522.1 1096201..1097151(+) (waaF) [Campylobacter jejuni strain BCH-11253]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.949

99.367

0.934

Multiple sequence alignment