Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACEZDF_RS08235 Genome accession   NZ_CP169539
Coordinates   1804118..1805539 (+) Length   473 a.a.
NCBI ID   WP_053306939.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain BR53     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799118..1810539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS08215 (ACEZDF_08215) - 1799599..1800405 (-) 807 WP_054576446.1 adenosylcobinamide-GDP ribazoletransferase -
  ACEZDF_RS08220 (ACEZDF_08220) cobT 1800405..1801448 (-) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACEZDF_RS08225 (ACEZDF_08225) - 1801697..1802386 (+) 690 WP_054577910.1 NAD(P)H-binding protein -
  ACEZDF_RS08230 (ACEZDF_08230) - 1802587..1803960 (+) 1374 WP_005377885.1 L-cystine transporter -
  ACEZDF_RS08235 (ACEZDF_08235) sbcB 1804118..1805539 (+) 1422 WP_053306939.1 exodeoxyribonuclease I Machinery gene
  ACEZDF_RS08240 (ACEZDF_08240) - 1805595..1805969 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  ACEZDF_RS08245 (ACEZDF_08245) - 1805971..1806648 (+) 678 WP_005377888.1 LrgB family protein -
  ACEZDF_RS08250 (ACEZDF_08250) cdd 1807080..1807967 (+) 888 WP_005377892.1 cytidine deaminase -
  ACEZDF_RS08255 (ACEZDF_08255) purT 1808111..1809286 (+) 1176 WP_054577911.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACEZDF_RS08260 (ACEZDF_08260) - 1809359..1810009 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54529.71 Da        Isoelectric Point: 4.8214

>NTDB_id=1051942 ACEZDF_RS08235 WP_053306939.1 1804118..1805539(+) (sbcB) [Vibrio alginolyticus strain BR53]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1051942 ACEZDF_RS08235 WP_053306939.1 1804118..1805539(+) (sbcB) [Vibrio alginolyticus strain BR53]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCAGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAGTTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment